Os07g0218600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os07g0218600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.39 | 0.35 | 2.9 | -0.131 | 0.278 | 0.343 | -0.438 | -0.858 | 0.0707 | 13.9 | 17.9 | 286 | -- | -- |
| 56.38 | 0.35 | 2.91 | -0.134 | 0.313 | 0.411 | 0.0441 | -- | 0.0633 | 14.3 | 19.67 | 294 | -- | -- |
| 55.72 | 0.348 | 2.9 | -0.142 | 0.281 | 0.346 | -- | -0.505 | 0.0685 | 13.9 | 17.08 | 286 | -- | -- |
| 56.35 | 0.35 | 2.9 | -0.157 | 0.278 | 0.36 | -- | -- | 0.0584 | 14.1 | 19.66 | 284 | -- | -- |
| 57.98 | 0.355 | 2.91 | -0.149 | -- | 0.184 | -- | -0.479 | 0.0458 | -- | 25.49 | 322 | -- | -- |
| 59.01 | 0.36 | 2.91 | -0.178 | 0.0581 | -- | 0.0745 | -- | 0.0277 | 10.8 | -- | -- | -- | -- |
| 59.03 | 0.36 | 2.91 | -0.175 | 0.0583 | -- | -- | -- | 0.0278 | 10.5 | -- | -- | -- | -- |
| 58.38 | 0.356 | 2.91 | -0.167 | -- | 0.171 | -- | -- | 0.0345 | -- | 29.04 | 326 | -- | -- |
| 57.01 | 0.352 | 2.9 | -- | 0.272 | 0.354 | -- | -- | 0.0688 | 14.1 | 18.84 | 287 | -- | -- |
| 59.24 | 0.36 | 2.91 | -0.176 | -- | -- | -- | -- | 0.0275 | -- | -- | -- | -- | -- |
| 59.84 | 0.362 | 2.91 | -- | 0.0595 | -- | -- | -- | 0.0473 | 10.7 | -- | -- | -- | -- |
| 59.14 | 0.358 | 2.91 | -- | -- | 0.154 | -- | -- | 0.0573 | -- | 22.29 | 301 | -- | -- |
| 60.06 | 0.362 | 2.91 | -- | -- | -- | -- | -- | 0.0471 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.21 | wind | 9.0 | 10 | > th | dose independent | rect. | 15 | 1 |
| 11 | 47.21 | wind | 9.0 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 23 | 48.22 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 25 | 48.22 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 27 | 48.42 | wind | 1.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 31 | 48.57 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 32 | 48.66 | wind | 1.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 33 | 48.82 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 11 | 1 |
| 43 | 51.12 | radiation | 10.0 | 90 | < th | dose independent | rect. | 11 | 1 |
| 103 | 53.81 | wind | 9.0 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 119 | 53.92 | wind | 9.0 | 270 | > th | dose independent | rect. | 1 | 15 |
| 137 | 54.07 | radiation | 10.0 | 270 | < th | dose independent | rect. | 8 | 7 |
| 139 | 54.09 | radiation | 20.0 | 90 | < th | dose independent | rect. | 10 | 6 |
| 147 | 54.23 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 4 | 8 |
| 155 | 54.35 | radiation | 20.0 | 270 | < th | dose independent | rect. | 18 | 22 |
| 160 | 54.38 | radiation | 10.0 | 720 | < th | dose independent | rect. | 4 | 8 |
| 168 | 54.44 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 176 | 54.48 | radiation | 10.0 | 720 | < th | dose independent | rect. | 20 | 16 |
| 221 | 54.63 | radiation | 10.0 | 720 | < th | dose independent | rect. | 24 | 12 |
| 245 | 54.75 | wind | 9.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 247 | 54.75 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 255 | 54.78 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 24 | 12 |
| 296 | 54.86 | wind | 3.0 | 10 | < th | dose independent | rect. | 12 | 1 |
| 353 | 55.01 | radiation | 20.0 | 720 | < th | dose dependent | sin | 8 | NA |
| 358 | 55.03 | radiation | 10.0 | 720 | < th | dose independent | sin | 8 | NA |
| 376 | 55.06 | radiation | 20.0 | 270 | < th | dose independent | rect. | 7 | 23 |
| 378 | 55.06 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 5 | 4 |
| 391 | 55.09 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 10 | 6 |
| 515 | 55.23 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 18 | 22 |
| 562 | 55.30 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 19 | 20 |
| 594 | 55.35 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 710 | 55.46 | radiation | 20.0 | 90 | < th | dose independent | rect. | 10 | 15 |
| 726 | 55.48 | wind | 3.0 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 783 | 55.52 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 785 | 55.52 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 792 | 55.53 | wind | 9.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 806 | 55.55 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 12 | 2 |
| 809 | 55.56 | radiation | 20.0 | 270 | < th | dose independent | no | NA | NA |
| 850 | 55.60 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 863 | 55.60 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 23 |
| 871 | 55.61 | wind | 9.0 | 270 | > th | dose independent | sin | 3 | NA |
| 905 | 55.63 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 916 | 55.64 | radiation | 20.0 | 270 | < th | dose independent | sin | 2 | NA |
| 950 | 55.66 | radiation | 20.0 | 90 | < th | dose independent | rect. | 10 | 22 |
| 959 | 55.67 | radiation | 10.0 | 720 | > th | dose independent | rect. | 6 | 5 |
| 998 | 55.69 | radiation | 10.0 | 720 | > th | dose independent | rect. | 7 | 3 |