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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0218200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0447) R2 : 0.000242
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0313 (0.0941) R2dN8 : 0.000313 R2N8 : 0.000242
σ : 0.842
deviance : 325.12
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
308.33 0.825 3.02 0.157 0.105 2.18 -0.226 4.54 0.0161 8.77 19.28 723 -- --
316.54 0.829 2.93 0.401 0.114 0.735 0.245 -- 0.185 9.24 23.88 809 -- --
308.36 0.818 3.02 0.169 0.118 2.24 -- 4.61 0.0132 8.96 19.03 718 -- --
316.22 0.828 2.96 0.337 0.116 0.658 -- -- 0.117 9.05 24.4 868 -- --
309.02 0.819 3.03 0.164 -- 2.34 -- 4.75 0.0178 -- 19.06 716 -- --
321.87 0.841 2.99 0.138 0.194 -- 0.301 -- -0.0148 10.8 -- -- -- --
322.23 0.841 2.98 0.149 0.195 -- -- -- -0.0144 10.4 -- -- -- --
316.94 0.829 2.96 0.348 -- 0.699 -- -- 0.125 -- 24.48 847 -- --
318.75 0.832 2.97 -- 0.129 0.494 -- -- 0.0523 9.97 24.3 846 -- --
324.55 0.842 2.99 0.146 -- -- -- -- -0.0151 -- -- -- -- --
322.82 0.84 2.99 -- 0.194 -- -- -- -0.031 10.4 -- -- -- --
319.7 0.833 2.97 -- -- 0.557 -- -- 0.0604 -- 24.3 768 -- --
325.12 0.842 2.99 -- -- -- -- -- -0.0313 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 301.76 temperature 25.0 720 < th dose dependent rect. 3 1
3 302.33 radiation 10.0 10 < th dose dependent rect. 12 1
5 302.42 radiation 10.0 10 < th dose dependent rect. 10 3
10 302.81 radiation 10.0 10 < th dose independent rect. 11 1
19 303.21 temperature 20.0 270 < th dose dependent rect. 8 1
20 303.23 temperature 20.0 720 < th dose independent rect. 3 1
21 303.24 wind 1.0 90 < th dose dependent rect. 24 1
24 303.52 temperature 25.0 90 < th dose independent rect. 11 3
26 303.60 radiation 10.0 90 > th dose independent rect. 17 14
30 303.70 precipitation 0.1 720 > th dose independent rect. 20 3
31 303.70 precipitation 0.1 720 > th dose dependent rect. 20 3
40 304.27 humidity 60.0 90 < th dose dependent rect. 17 1
47 304.39 temperature 15.0 720 > th dose dependent rect. 3 3
76 305.02 humidity 60.0 30 < th dose independent rect. 17 2
92 305.12 temperature 15.0 720 > th dose dependent rect. 1 5
99 305.25 temperature 20.0 720 > th dose independent rect. 3 3
100 305.33 temperature 10.0 720 > th dose dependent rect. 23 7
103 305.41 temperature 20.0 720 > th dose independent rect. 8 8
104 305.42 wind 7.0 720 > th dose independent rect. 21 12
105 305.43 temperature 20.0 720 > th dose independent rect. 3 13
106 305.46 temperature 25.0 720 < th dose dependent rect. 24 13
155 305.87 wind 5.0 90 > th dose independent rect. 13 1
156 305.89 temperature 25.0 10 < th dose independent rect. 11 4
159 305.91 wind 7.0 720 > th dose dependent rect. 21 12
170 306.00 wind 1.0 90 < th dose dependent rect. 6 2
177 306.14 humidity 50.0 4320 < th dose independent rect. 9 1
193 306.14 humidity 50.0 4320 < th dose dependent rect. 9 1
214 306.26 temperature 25.0 720 < th dose dependent rect. 24 17
231 306.42 temperature 20.0 720 > th dose independent rect. 3 7
288 306.88 wind 1.0 90 < th dose independent rect. 24 1
296 306.93 wind 5.0 90 > th dose dependent rect. 2 1
313 306.94 wind 5.0 90 > th dose independent rect. 2 1
315 306.98 wind 1.0 90 < th dose dependent rect. 6 5
318 307.00 temperature 20.0 720 > th dose independent rect. 3 17
328 307.15 temperature 25.0 720 < th dose dependent sin 6 NA
335 307.20 temperature 20.0 720 < th dose independent rect. 3 15
336 307.20 temperature 25.0 270 < th dose dependent rect. 11 1
372 307.33 wind 1.0 30 < th dose independent rect. 6 2
384 307.39 temperature 20.0 720 < th dose independent rect. 3 9
398 307.43 temperature 20.0 720 < th dose dependent rect. 3 17
409 307.49 wind 7.0 720 > th dose dependent rect. 21 5
457 307.60 temperature 20.0 720 < th dose dependent sin 1 NA
471 307.63 wind 1.0 90 < th dose independent rect. 7 20
496 307.71 temperature 30.0 10 < th dose dependent rect. 11 4
515 307.78 wind 5.0 90 > th dose dependent rect. 13 1
525 307.81 temperature 20.0 720 < th dose dependent rect. 5 15
531 307.82 atmosphere 1015.0 43200 > th dose dependent rect. 10 10
537 307.85 temperature 25.0 1440 > th dose independent rect. 23 8
545 307.88 atmosphere 1015.0 43200 > th dose dependent rect. 11 7
584 308.00 atmosphere 1015.0 43200 > th dose dependent rect. 12 3
603 308.05 atmosphere 1015.0 43200 > th dose dependent rect. 13 1
613 308.06 temperature 25.0 1440 < th dose independent rect. 23 8
677 308.16 temperature 20.0 720 < th dose independent sin 2 NA
678 308.16 wind 7.0 720 > th dose independent rect. 23 10
687 308.19 temperature 25.0 1440 > th dose independent rect. 23 4
711 308.23 wind 7.0 720 > th dose independent rect. 21 5
765 308.30 atmosphere 1015.0 43200 > th dose independent rect. 13 6
774 308.32 atmosphere 1015.0 43200 < th dose independent rect. 14 4
787 308.35 atmosphere 1015.0 43200 < th dose independent rect. 14 6
804 308.38 atmosphere 1015.0 43200 < th dose independent rect. 19 1
805 308.38 temperature 25.0 10 < th dose independent rect. 7 8
809 308.39 temperature 20.0 720 < th dose independent rect. 8 10
854 308.54 wind 7.0 720 > th dose dependent rect. 23 10
871 308.60 wind 7.0 720 > th dose independent rect. 21 1
886 308.64 temperature 20.0 720 < th dose independent rect. 5 13
890 308.66 temperature 30.0 90 < th dose dependent rect. 11 3
899 308.71 temperature 20.0 720 < th dose independent rect. 5 4
913 308.76 temperature 20.0 720 > th dose independent sin 1 NA
917 308.76 wind 7.0 720 > th dose dependent rect. 21 1
919 308.76 temperature 20.0 4320 < th dose dependent rect. 5 13
926 308.77 atmosphere 1015.0 43200 > th dose dependent sin 18 NA
951 308.81 radiation 20.0 10 > th dose independent rect. 8 1
952 308.81 atmosphere 1015.0 43200 > th dose independent rect. 16 5
972 308.84 radiation 20.0 10 > th dose dependent rect. 8 1
985 308.87 atmosphere 1015.0 43200 > th dose independent rect. 14 1
986 308.87 temperature 25.0 1440 < th dose independent rect. 23 3
994 308.88 temperature 20.0 4320 < th dose dependent rect. 5 6