Os07g0216600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cereal seed allergen, trypsin/alpha-amylase inhibitor family protein.
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Os07g0216600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cereal seed allergen, trypsin/alpha-amylase inhibitor family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.95 | 0.253 | 2.98 | -0.0707 | 0.0947 | 0.054 | 0.166 | -1.14 | 0.00599 | 11 | 43.63 | 4354 | -- | -- |
| 29.39 | 0.253 | 2.99 | 0.0919 | 0.107 | 0.249 | 0.163 | -- | 0.0167 | 12 | 64.86 | 5638 | -- | -- |
| 29.06 | 0.251 | 2.98 | -0.0653 | 0.0965 | 0.04 | -- | -1.15 | 0.00704 | 10.8 | 44.42 | 4351 | -- | -- |
| 29.24 | 0.252 | 2.98 | 0.101 | 0.0852 | 0.346 | -- | -- | 0.0429 | 11 | 64.11 | 5638 | -- | -- |
| 29.6 | 0.253 | 2.98 | -0.0592 | -- | 0.0408 | -- | -1.2 | 0.0106 | -- | 45.47 | 4351 | -- | -- |
| 30.75 | 0.26 | 2.99 | -0.0366 | 0.104 | -- | 0.15 | -- | 0.00132 | 11.1 | -- | -- | -- | -- |
| 30.84 | 0.26 | 2.99 | -0.0306 | 0.103 | -- | -- | -- | 0.00174 | 10.9 | -- | -- | -- | -- |
| 29.84 | 0.254 | 2.98 | 0.104 | -- | 0.402 | -- | -- | 0.0525 | -- | 63.6 | 5743 | -- | -- |
| 29.46 | 0.253 | 2.98 | -- | 0.0968 | 0.32 | -- | -- | 0.0328 | 10.7 | 63.76 | 5732 | -- | -- |
| 31.51 | 0.262 | 2.99 | -0.0329 | -- | -- | -- | -- | 0.000999 | -- | -- | -- | -- | -- |
| 30.87 | 0.26 | 2.99 | -- | 0.104 | -- | -- | -- | 0.00515 | 11 | -- | -- | -- | -- |
| 30.02 | 0.255 | 2.98 | -- | -- | 0.343 | -- | -- | 0.0352 | -- | 59.78 | 5734 | -- | -- |
| 31.54 | 0.262 | 2.99 | -- | -- | -- | -- | -- | 0.00465 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.23 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 7 |
| 7 | 28.57 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 10 | 28.66 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 11 | 28.69 | wind | 9 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 14 | 28.72 | wind | 9 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 21 | 28.77 | wind | 9 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 26 | 28.79 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 133 | 28.88 | atmosphere | 1010 | 30 | > th | dose dependent | sin | 0 | NA |
| 358 | 28.92 | radiation | 40 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 359 | 28.92 | radiation | 40 | 4320 | > th | dose dependent | rect. | 10 | 3 |
| 398 | 28.94 | radiation | 40 | 4320 | > th | dose dependent | rect. | 10 | 5 |
| 501 | 28.95 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 1 |
| 502 | 28.95 | radiation | 1 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 519 | 28.97 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 8 | 12 |
| 523 | 28.98 | radiation | 40 | 4320 | > th | dose dependent | rect. | 14 | 23 |
| 527 | 29.01 | radiation | 40 | 4320 | > th | dose dependent | sin | 22 | NA |
| 534 | 29.01 | radiation | 40 | 4320 | > th | dose dependent | no | NA | NA |
| 757 | 29.03 | humidity | 50 | 4320 | > th | dose independent | rect. | 24 | 12 |
| 772 | 29.04 | humidity | 50 | 4320 | > th | dose independent | rect. | 9 | 3 |
| 778 | 29.05 | radiation | 10 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 817 | 29.06 | humidity | 50 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 833 | 29.07 | humidity | 50 | 4320 | > th | dose independent | rect. | 6 | 6 |
| 850 | 29.08 | humidity | 50 | 4320 | > th | dose independent | rect. | 18 | 18 |
| 855 | 29.09 | radiation | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 862 | 29.10 | humidity | 50 | 4320 | > th | dose independent | rect. | 20 | 16 |
| 955 | 29.12 | radiation | 1 | 4320 | > th | dose dependent | rect. | 10 | 5 |
| 997 | 29.14 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 1 |