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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0216100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.22 (0.0323) R2 : 0.0011
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0482 (0.0681) R2dN8 : 0.00142 R2N8 : 0.0011
σ : 0.609
deviance : 170.11
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
162.54 0.599 3.23 -0.0831 0.00464 -0.116 1.02 1.99 0.00478 15.3 39.62 652 -- --
167.41 0.607 3.22 -0.00646 0.0284 -0.198 -0.488 -- 0.0487 23.3 34.61 1093 -- --
164.02 0.596 3.23 -0.063 0.0553 -0.156 -- 1.93 -0.000441 15.1 39.07 949 -- --
167.41 0.603 3.21 0.0454 0.045 -0.285 -- -- 0.0727 23.9 61.8 1153 -- --
163.74 0.596 3.24 -0.0926 -- -0.152 -- 2.01 -0.0164 -- 46.26 954 -- --
168.77 0.609 3.22 0.00459 0.0471 -- 0.527 -- 0.0494 11.5 -- -- -- --
169.94 0.61 3.22 0.0267 0.0497 -- -- -- 0.052 13.3 -- -- -- --
166.36 0.601 3.2 0.136 -- -0.39 -- -- 0.112 -- 63.92 1468 -- --
166.28 0.601 3.21 -- 0.0231 -0.487 -- -- 0.0933 11.7 62.43 1468 -- --
170.09 0.609 3.22 0.0247 -- -- -- -- 0.051 -- -- -- -- --
169.96 0.61 3.22 -- 0.0492 -- -- -- 0.0491 13.3 -- -- -- --
166.19 0.6 3.21 -- -- -0.509 -- -- 0.0899 -- 62.59 1469 -- --
170.11 0.609 3.22 -- -- -- -- -- 0.0482 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 159.03 radiation 20 720 > th dose dependent rect. 15 17
2 159.14 radiation 20 720 > th dose independent rect. 15 17
3 159.19 radiation 20 720 > th dose dependent rect. 14 20
5 159.32 radiation 20 720 > th dose dependent sin 12 NA
8 159.45 radiation 40 720 > th dose independent rect. 14 20
11 159.76 radiation 40 720 < th dose independent sin 12 NA
18 160.29 radiation 30 720 > th dose independent sin 12 NA
31 160.62 radiation 40 720 < th dose independent rect. 2 9
38 160.80 radiation 40 720 < th dose dependent rect. 15 8
57 161.17 radiation 20 720 > th dose independent rect. 15 1
63 161.23 atmosphere 1000 720 > th dose independent rect. 21 8
79 161.30 atmosphere 1000 90 < th dose dependent rect. 3 11
89 161.53 radiation 20 720 < th dose independent rect. 15 8
90 161.53 atmosphere 1000 720 < th dose dependent rect. 3 1
91 161.53 radiation 1 720 > th dose dependent rect. 15 15
102 161.66 wind 1 4320 < th dose dependent rect. 15 3
105 161.69 radiation 10 720 > th dose dependent rect. 15 1
112 161.71 radiation 40 720 > th dose dependent rect. 8 3
142 161.82 radiation 40 720 < th dose independent rect. 17 18
150 161.83 radiation 40 720 < th dose dependent rect. 15 16
179 161.91 radiation 40 720 < th dose independent rect. 2 21
214 161.97 radiation 20 720 < th dose independent rect. 15 16
217 161.99 radiation 40 720 < th dose independent sin 7 NA
222 162.01 atmosphere 1000 720 > th dose independent rect. 1 8
262 162.07 atmosphere 1000 720 < th dose independent rect. 2 1
271 162.09 wind 1 4320 < th dose independent rect. 15 3
278 162.10 radiation 40 720 < th dose independent rect. 17 20
289 162.14 radiation 40 720 > th dose independent rect. 8 2
292 162.14 humidity 80 30 < th dose independent rect. 1 5
310 162.14 wind 1 4320 < th dose dependent rect. 15 6
324 162.18 temperature 15 14400 > th dose independent rect. 13 1
327 162.19 humidity 80 30 < th dose dependent rect. 1 5
340 162.23 wind 9 43200 < th dose independent rect. 23 2
348 162.26 wind 9 43200 < th dose independent rect. 23 4
380 162.29 wind 9 43200 > th dose independent rect. 23 5
383 162.30 radiation 40 720 < th dose independent rect. 2 17
396 162.32 radiation 40 1440 < th dose independent rect. 15 20
398 162.32 atmosphere 1000 270 < th dose dependent sin 6 NA
432 162.35 radiation 40 720 < th dose dependent sin 13 NA
439 162.36 humidity 80 43200 > th dose dependent rect. 6 2
444 162.37 radiation 40 720 < th dose independent rect. 17 16
451 162.39 radiation 40 720 < th dose independent rect. 21 16
485 162.41 humidity 60 10 < th dose dependent rect. 18 20
514 162.44 radiation 40 720 < th dose independent rect. 19 16
523 162.46 wind 9 43200 > th dose dependent rect. 23 5
526 162.47 radiation 40 720 < th dose independent rect. 7 16
531 162.48 humidity 70 43200 > th dose dependent rect. 5 8
539 162.50 atmosphere 995 1440 > th dose independent rect. 17 1
547 162.50 humidity 60 10 < th dose dependent rect. 9 5
628 162.54 humidity 80 30 < th dose dependent rect. 1 3
632 162.55 wind 9 43200 < th dose independent rect. 23 10
656 162.56 radiation 40 1440 < th dose independent rect. 7 4
662 162.56 wind 9 43200 < th dose independent rect. 23 13
663 162.56 radiation 40 1440 < th dose independent rect. 22 13
680 162.57 wind 1 4320 > th dose independent rect. 15 3
686 162.57 radiation 1 720 > th dose independent rect. 13 16
688 162.57 radiation 40 720 < th dose independent rect. 7 22
698 162.58 wind 9 43200 > th dose independent rect. 22 11
707 162.59 radiation 40 720 < th dose independent rect. 13 23
732 162.61 atmosphere 1000 270 < th dose independent rect. 1 10
754 162.62 radiation 1 720 > th dose independent rect. 13 6
772 162.63 temperature 15 14400 < th dose independent rect. 13 1
777 162.63 atmosphere 1000 720 < th dose dependent sin 9 NA
804 162.65 temperature 10 43200 > th dose independent rect. 19 1
823 162.66 wind 1 1440 > th dose independent rect. 13 3
834 162.67 wind 7 43200 > th dose dependent rect. 2 8
838 162.68 humidity 80 43200 > th dose independent rect. 6 7
865 162.69 humidity 60 90 < th dose dependent rect. 8 5
866 162.69 wind 7 43200 > th dose dependent rect. 4 6
891 162.70 wind 9 43200 < th dose independent rect. 4 8
923 162.71 humidity 60 10 < th dose dependent sin 6 NA
934 162.72 humidity 80 30 < th dose dependent rect. 1 1
944 162.73 radiation 1 43200 > th dose independent rect. 11 1
945 162.73 wind 9 43200 < th dose independent rect. 2 10
969 162.74 atmosphere 1015 14400 < th dose independent rect. 16 1
970 162.74 wind 9 43200 > th dose independent rect. 23 2
977 162.74 wind 9 43200 > th dose dependent rect. 22 10
980 162.75 wind 9 43200 > th dose independent rect. 2 10