Os07g0213500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os07g0213500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.95 | 0.393 | 10.1 | -0.416 | 0.0106 | 1.38 | -0.674 | -0.459 | 0.531 | 10.3 | 29.44 | 45 | -- | -- |
| 70.22 | 0.39 | 10.1 | -0.42 | 0.00106 | 1.37 | -0.344 | -- | 0.529 | 9.5 | 29.71 | 45 | -- | -- |
| 70.6 | 0.391 | 10.1 | -0.429 | 0.00747 | 1.38 | -- | 0.0666 | 0.528 | 10.3 | 29.84 | 45 | -- | -- |
| 70.62 | 0.391 | 10.1 | -0.43 | 0.0141 | 1.38 | -- | -- | 0.529 | 11.8 | 29.75 | 45 | -- | -- |
| 70.6 | 0.391 | 10.1 | -0.429 | -- | 1.37 | -- | 0.0674 | 0.528 | -- | 29.89 | 45 | -- | -- |
| 102.11 | 0.474 | 10.1 | -0.469 | 1.19 | -- | 0.345 | -- | 0.45 | 0.33 | -- | -- | -- | -- |
| 102.63 | 0.474 | 10.1 | -0.482 | 1.19 | -- | -- | -- | 0.448 | 0.347 | -- | -- | -- | -- |
| 70.62 | 0.391 | 10.1 | -0.431 | -- | 1.37 | -- | -- | 0.528 | -- | 29.89 | 45 | -- | -- |
| 75.47 | 0.405 | 10.1 | -- | 0.0563 | 1.41 | -- | -- | 0.578 | 12.9 | 29 | 47 | -- | -- |
| 191.08 | 0.646 | 10.1 | -0.443 | -- | -- | -- | -- | 0.467 | -- | -- | -- | -- | -- |
| 108.76 | 0.488 | 10.1 | -- | 1.18 | -- | -- | -- | 0.502 | 0.326 | -- | -- | -- | -- |
| 75.53 | 0.405 | 10.1 | -- | -- | 1.37 | -- | -- | 0.588 | -- | 29.31 | 47 | -- | -- |
| 196.25 | 0.654 | 10.1 | -- | -- | -- | -- | -- | 0.516 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.67 | radiation | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 9 | 69.75 | radiation | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 14 | 69.94 | radiation | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 16 | 70.01 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 22 | 70.30 | radiation | 30 | 30 | < th | dose dependent | no | NA | NA |
| 23 | 70.31 | radiation | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 28 | 70.44 | radiation | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 43 | 70.75 | radiation | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 62 | 71.14 | radiation | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 69 | 71.39 | radiation | 20 | 270 | < th | dose dependent | sin | 5 | NA |
| 72 | 71.45 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 16 |
| 85 | 71.70 | radiation | 1 | 90 | > th | dose dependent | rect. | 6 | 10 |
| 86 | 71.77 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 16 |
| 125 | 72.39 | radiation | 1 | 90 | > th | dose dependent | sin | 2 | NA |
| 156 | 72.68 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 10 |
| 180 | 72.90 | radiation | 10 | 90 | > th | dose independent | sin | 1 | NA |
| 181 | 72.90 | radiation | 20 | 90 | < th | dose independent | rect. | 12 | 23 |
| 221 | 73.12 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 253 | 73.20 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 309 | 73.30 | radiation | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 355 | 73.59 | radiation | 10 | 30 | < th | dose independent | sin | 0 | NA |
| 581 | 74.06 | radiation | 1 | 270 | > th | dose dependent | sin | 6 | NA |
| 644 | 74.42 | radiation | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 649 | 74.52 | radiation | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 684 | 74.76 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 700 | 74.89 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 701 | 74.89 | radiation | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 767 | 75.15 | radiation | 40 | 10 | < th | dose dependent | rect. | 3 | 19 |
| 777 | 75.24 | radiation | 20 | 90 | < th | dose independent | rect. | 1 | 22 |
| 810 | 75.42 | radiation | 20 | 90 | < th | dose independent | rect. | 23 | 23 |
| 870 | 75.71 | radiation | 10 | 270 | < th | dose independent | sin | 4 | NA |
| 880 | 75.78 | radiation | 10 | 10 | < th | dose independent | rect. | 13 | 22 |
| 943 | 75.96 | radiation | 20 | 90 | < th | dose independent | rect. | 15 | 23 |
| 990 | 76.11 | radiation | 20 | 90 | < th | dose independent | no | NA | NA |