Os07g0211400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Kinase associated protein phosphatase.
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Os07g0211400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Kinase associated protein phosphatase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.62 | 0.264 | 9.68 | -1.22 | 1.26 | 0.285 | -0.916 | -5.07 | -0.00848 | 5.2 | 26.3 | 677 | -- | -- |
| 33.67 | 0.272 | 9.59 | -0.507 | 1.13 | -0.478 | -0.593 | -- | 0.149 | 5.48 | 26.3 | 677 | -- | -- |
| 33.29 | 0.269 | 9.67 | -1.17 | 1.25 | 0.277 | -- | -4.74 | 0.0197 | 5.14 | 27.02 | 744 | -- | -- |
| 34.52 | 0.275 | 9.59 | -0.513 | 1.13 | -0.444 | -- | -- | 0.15 | 5.46 | 26.3 | 677 | -- | -- |
| 74.77 | 0.403 | 9.54 | -0.208 | -- | -1.3 | -- | 0.118 | 0.401 | -- | 24.1 | 262 | -- | -- |
| 37.05 | 0.285 | 9.6 | -0.575 | 1.25 | -- | -0.409 | -- | 0.134 | 5.18 | -- | -- | -- | -- |
| 37.47 | 0.287 | 9.59 | -0.575 | 1.25 | -- | -- | -- | 0.136 | 5.18 | -- | -- | -- | -- |
| 73.73 | 0.4 | 9.58 | -0.327 | -- | -1.27 | -- | -- | 0.291 | -- | 24.26 | 272 | -- | -- |
| 39.9 | 0.294 | 9.58 | -- | 1.24 | -0.414 | -- | -- | 0.201 | 5.12 | 25.52 | 4507 | -- | -- |
| 119.29 | 0.51 | 9.61 | -0.531 | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
| 46.17 | 0.318 | 9.58 | -- | 1.24 | -- | -- | -- | 0.2 | 5.19 | -- | -- | -- | -- |
| 76.44 | 0.407 | 9.57 | -- | -- | -1.31 | -- | -- | 0.332 | -- | 24.2 | 272 | -- | -- |
| 126.71 | 0.525 | 9.6 | -- | -- | -- | -- | -- | 0.227 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.63 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 10 |
| 3 | 30.94 | temperature | 25.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 6 | 30.97 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 7 | 31.07 | wind | 1.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 9 | 31.10 | wind | 1.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 11 | 31.14 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 13 | 31.16 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 16 | 31.19 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 12 | 11 |
| 20 | 31.26 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 21 | 31.27 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 23 | 31.29 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 25 | 31.29 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 26 | 31.31 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 4 |
| 27 | 31.31 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 35 | 31.35 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 42 | 31.37 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 43 | 31.37 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 58 | 31.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 129 | 31.67 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 155 | 31.75 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 6 |
| 184 | 31.77 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 203 | 31.83 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 206 | 31.84 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 209 | 31.85 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 213 | 31.86 | temperature | 25.0 | 270 | > th | dose independent | sin | 7 | NA |
| 220 | 31.87 | temperature | 20.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 228 | 31.90 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 18 |
| 241 | 31.93 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 260 | 31.96 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 3 | 20 |
| 276 | 31.98 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 18 | NA |
| 300 | 32.00 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 3 | 20 |
| 309 | 32.02 | temperature | 25.0 | 270 | < th | dose independent | sin | 7 | NA |
| 360 | 32.08 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 8 |
| 364 | 32.08 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 377 | 32.09 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 381 | 32.10 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 384 | 32.10 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 385 | 32.10 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 393 | 32.12 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 437 | 32.19 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 439 | 32.19 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 466 | 32.22 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 23 | 3 |
| 498 | 32.26 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 20 |
| 512 | 32.27 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 524 | 32.28 | temperature | 30.0 | 90 | < th | dose dependent | sin | 5 | NA |
| 533 | 32.29 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 534 | 32.29 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 1 | 7 |
| 542 | 32.30 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 567 | 32.32 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 585 | 32.34 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 588 | 32.34 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 20 |
| 590 | 32.34 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 609 | 32.36 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 640 | 32.39 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 652 | 32.40 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 664 | 32.41 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 23 | 3 |
| 665 | 32.41 | temperature | 25.0 | 720 | > th | dose independent | rect. | 6 | 4 |
| 668 | 32.41 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 1 | 21 |
| 694 | 32.43 | temperature | 25.0 | 720 | > th | dose dependent | no | NA | NA |
| 715 | 32.44 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 6 | 22 |
| 716 | 32.44 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 719 | 32.45 | wind | 3.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 720 | 32.45 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 745 | 32.46 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 1 | 7 |
| 762 | 32.46 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 785 | 32.48 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 791 | 32.48 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 1 | 9 |
| 794 | 32.48 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 806 | 32.49 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 11 | 12 |
| 827 | 32.51 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 845 | 32.52 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 849 | 32.52 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 850 | 32.52 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 883 | 32.53 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 885 | 32.54 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 936 | 32.57 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 951 | 32.57 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 18 | 17 |
| 979 | 32.59 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 983 | 32.59 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 9 |