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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0209700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1677, Oryza sativa family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.79 (0.0448) R2 : 0.169
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.26 (0.145) R2dE : 0.138 R2E : 0.135
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.356 (0.0944) R2dN8 : 0.0336 R2N8 : 0.0311
σ : 0.842
deviance : 326.54
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 29.31
memory length : 2140
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
297.69 0.811 3.96 -2.01 0.696 -1.58 1.09 6.68 0.374 20.9 29.99 1393 -- --
298.19 0.804 3.85 -0.639 0.586 -1.2 1.03 -- 0.219 20.9 29.4 2177 -- --
301.65 0.809 3.96 -2.04 0.685 -1.59 -- 6.75 0.37 21.1 29.98 1374 -- --
298.87 0.805 3.81 -0.609 0.522 -1.22 -- -- 0.327 21.9 29.43 2145 -- --
310.4 0.821 3.97 -1.81 -- -2.1 -- 7.16 0.153 -- 29.69 2166 -- --
341.13 0.866 3.81 -0.287 0.754 -- 1.01 -- 0.36 21.4 -- -- -- --
344.79 0.87 3.81 -0.325 0.748 -- -- -- 0.357 21.6 -- -- -- --
315.62 0.827 3.81 -0.672 -- -1.39 -- -- 0.301 -- 29.45 2146 -- --
308.89 0.819 3.8 -- 0.539 -1.1 -- -- 0.367 21.9 29.3 2121 -- --
377.83 0.908 3.79 -0.319 -- -- -- -- 0.356 -- -- -- -- --
347.58 0.872 3.81 -- 0.747 -- -- -- 0.394 21.6 -- -- -- --
326.54 0.842 3.79 -- -- -1.26 -- -- 0.356 -- 29.31 2140 -- --
380.53 0.911 3.79 -- -- -- -- -- 0.391 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 288.76 temperature 30 90 < th dose dependent rect. 14 18
3 289.08 temperature 30 90 < th dose dependent rect. 11 21
13 291.89 temperature 30 270 < th dose dependent rect. 11 19
16 292.61 temperature 10 720 > th dose dependent rect. 7 13
22 293.50 radiation 1 43200 < th dose dependent rect. 19 5
26 293.74 temperature 30 720 < th dose independent rect. 10 13
30 293.97 temperature 30 720 < th dose independent rect. 11 11
36 294.43 temperature 10 270 > th dose dependent rect. 15 23
40 294.75 atmosphere 1000 43200 < th dose independent rect. 14 1
41 294.83 temperature 30 10 < th dose dependent rect. 12 20
50 295.15 atmosphere 1000 43200 > th dose independent rect. 14 1
65 295.48 temperature 30 720 < th dose independent rect. 5 17
66 295.48 wind 9 43200 > th dose dependent sin 15 NA
70 295.55 atmosphere 1000 43200 < th dose dependent rect. 15 1
80 295.71 humidity 60 14400 < th dose independent rect. 17 2
102 296.04 radiation 1 43200 < th dose dependent rect. 21 3
116 296.34 wind 9 43200 > th dose dependent rect. 13 18
120 296.43 radiation 1 43200 < th dose dependent rect. 19 8
133 296.65 temperature 10 720 > th dose dependent rect. 7 21
140 296.72 temperature 15 90 > th dose dependent rect. 7 23
152 296.87 wind 9 43200 > th dose dependent rect. 20 1
155 296.88 wind 9 43200 > th dose dependent rect. 17 13
158 296.94 temperature 30 720 < th dose independent rect. 10 15
160 296.98 temperature 30 720 < th dose independent rect. 10 21
165 297.08 wind 5 43200 > th dose dependent rect. 20 1
183 297.32 humidity 60 14400 < th dose dependent rect. 17 1
187 297.41 temperature 15 720 > th dose dependent sin 21 NA
190 297.46 temperature 15 270 > th dose dependent rect. 16 11
191 297.47 temperature 30 720 < th dose independent rect. 24 23
209 297.57 temperature 30 1440 < th dose independent rect. 12 23
223 297.68 wind 9 43200 > th dose independent rect. 20 1
226 297.69 temperature 30 1440 < th dose independent rect. 3 16
236 297.72 temperature 30 1440 < th dose independent rect. 6 13
244 297.72 temperature 20 1440 > th dose dependent rect. 19 1
277 297.77 temperature 30 1440 > th dose independent rect. 13 22
292 297.78 temperature 20 1440 > th dose dependent rect. 18 4
302 297.79 wind 7 43200 > th dose dependent rect. 17 22
306 297.80 temperature 30 1440 < th dose independent rect. 20 23
310 297.81 temperature 30 1440 < th dose independent no NA NA
313 297.81 temperature 30 1440 < th dose independent rect. 6 23
315 297.81 temperature 30 1440 < th dose independent rect. 17 23
317 297.82 wind 9 43200 > th dose independent sin 14 NA
339 297.88 temperature 30 1440 < th dose independent sin 22 NA
348 297.91 humidity 50 14400 < th dose dependent rect. 17 17
400 298.05 temperature 25 720 > th dose dependent rect. 16 22
403 298.06 radiation 1 43200 < th dose dependent rect. 21 6
422 298.13 temperature 30 1440 > th dose independent rect. 17 23
427 298.15 temperature 30 1440 > th dose independent no NA NA
428 298.15 temperature 30 1440 > th dose independent rect. 8 11
429 298.15 wind 9 43200 < th dose independent rect. 18 12
537 298.19 wind 9 43200 > th dose dependent rect. 11 21
554 298.24 humidity 50 14400 < th dose independent rect. 17 17
559 298.25 wind 9 43200 < th dose independent rect. 17 22
566 298.27 temperature 30 1440 > th dose independent rect. 10 23
573 298.29 temperature 30 1440 > th dose independent sin 22 NA
586 298.31 wind 9 43200 > th dose independent rect. 18 12
603 298.32 temperature 30 1440 < th dose independent rect. 12 7
617 298.34 temperature 10 4320 > th dose dependent rect. 18 4
646 298.37 wind 9 43200 < th dose independent rect. 13 20
657 298.39 wind 9 43200 > th dose dependent rect. 19 3
662 298.40 wind 9 43200 > th dose independent rect. 13 19
665 298.41 wind 9 43200 < th dose independent rect. 20 1
675 298.42 temperature 10 4320 > th dose dependent rect. 21 1
676 298.43 temperature 30 1440 < th dose independent rect. 12 17
684 298.44 wind 9 43200 < th dose independent sin 13 NA
695 298.45 wind 7 43200 > th dose dependent rect. 9 23
697 298.46 wind 1 43200 < th dose dependent rect. 20 1
743 298.51 wind 5 43200 > th dose dependent rect. 13 23
747 298.52 wind 7 43200 > th dose dependent rect. 3 18
754 298.54 temperature 30 4320 < th dose dependent rect. 21 1
759 298.56 temperature 30 4320 < th dose dependent rect. 18 4
768 298.58 temperature 25 720 > th dose dependent rect. 16 19
771 298.59 wind 7 43200 > th dose dependent rect. 8 14
772 298.59 humidity 60 14400 < th dose dependent rect. 17 15
774 298.59 wind 7 43200 > th dose dependent rect. 24 21
802 298.62 wind 9 43200 > th dose dependent rect. 17 8
820 298.65 wind 7 43200 > th dose dependent rect. 8 17
879 298.73 humidity 60 14400 < th dose dependent rect. 17 4
955 298.80 temperature 30 1440 > th dose independent rect. 12 7
984 298.82 atmosphere 1000 43200 < th dose independent rect. 4 11