Os07g0209500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Polynucleotidyl transferase, Ribonuclease H fold domain containing protein.
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Os07g0209500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Polynucleotidyl transferase, Ribonuclease H fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 282.06 | 0.789 | 3.98 | 1.36 | 1.39 | -1.5 | 0.362 | -3.72 | -0.0441 | 10.5 | 1.081 | 4342 | 2.03 | 3.9 |
| 298.37 | 0.805 | 3.97 | 0.94 | 1.51 | -1.59 | 0.955 | -- | -0.115 | 10.4 | 1.052 | 4338 | 2 | 3.92 |
| 282.48 | 0.783 | 3.99 | 1.38 | 1.4 | -1.48 | -- | -3.71 | -0.0319 | 10.4 | 1.074 | 4347 | 1.98 | 3.91 |
| 294.63 | 0.799 | 3.94 | 0.861 | 1.39 | -1.72 | -- | -- | -0.0695 | 10.4 | 1.056 | 4340 | 2.01 | 3.95 |
| 395.39 | 0.926 | 4.01 | 1.39 | -- | -1.73 | -- | -3.43 | -0.0136 | -- | 1.1 | 4344 | 1.83 | 3.96 |
| 368.56 | 0.9 | 3.92 | 0.64 | 1.36 | -- | 0.281 | -- | 0.0796 | 10.6 | -- | -- | -- | -- |
| 368.88 | 0.899 | 3.92 | 0.652 | 1.36 | -- | -- | -- | 0.0804 | 10.6 | -- | -- | -- | -- |
| 407.11 | 0.94 | 4.01 | 0.906 | -- | -1.76 | -- | -- | -0.143 | -- | 1.05 | 4336 | 1.88 | 4.01 |
| 308.9 | 0.819 | 3.99 | -- | 1.39 | -1.75 | -- | -- | -0.281 | 10.2 | 1.04 | 4345 | 2.03 | 4 |
| 482.23 | 1.03 | 3.96 | 0.627 | -- | -- | -- | -- | 0.0743 | -- | -- | -- | -- | -- |
| 380.08 | 0.912 | 3.94 | -- | 1.35 | -- | -- | -- | 0.00785 | 10.5 | -- | -- | -- | -- |
| 422.59 | 0.957 | 4.03 | -- | -- | -1.72 | -- | -- | -0.231 | -- | 1.04 | 4340 | 1.9 | 4.07 |
| 492.61 | 1.04 | 3.97 | -- | -- | -- | -- | -- | 0.00471 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 289.20 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 5 |
| 3 | 291.28 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 4 | 291.46 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 5 | 291.64 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 13 |
| 9 | 291.81 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 14 | 291.93 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 19 | 292.00 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 20 | 292.00 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 22 | 292.00 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 12 |
| 27 | 292.17 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 49 | 292.38 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 2 | 4 |
| 82 | 292.55 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 19 | 11 |
| 92 | 292.60 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 17 | 3 |
| 95 | 292.61 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 105 | 292.66 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 128 | 292.70 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 132 | 292.71 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 176 | 292.83 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 16 | 19 |
| 182 | 292.84 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 3 | 17 |
| 192 | 292.85 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 17 | 18 |
| 276 | 292.94 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 3 | 3 |
| 339 | 293.00 | temperature | 10.0 | 43200 | > th | dose dependent | sin | 4 | NA |
| 351 | 293.01 | temperature | 30.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 375 | 293.03 | temperature | 10.0 | 43200 | > th | dose dependent | no | NA | NA |
| 387 | 293.03 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 8 | 23 |
| 390 | 293.04 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 8 | NA |
| 391 | 293.04 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 8 | NA |
| 394 | 293.04 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 8 | NA |
| 470 | 293.08 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 8 | 14 |
| 563 | 293.14 | temperature | 10.0 | 43200 | > th | dose dependent | sin | 17 | NA |
| 583 | 293.14 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 3 | 19 |
| 584 | 293.14 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 1 | 21 |
| 586 | 293.15 | temperature | 10.0 | 43200 | > th | dose dependent | sin | 15 | NA |
| 749 | 293.23 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 765 | 293.25 | temperature | 30.0 | 43200 | < th | dose dependent | no | NA | NA |
| 815 | 293.27 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 816 | 293.27 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 859 | 293.30 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 19 | 23 |
| 872 | 293.32 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 13 | 18 |
| 897 | 293.34 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 6 |