Os07g0208300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0208300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.54 | 0.233 | 2.98 | 0.0618 | 0.056 | 1.73 | 0.235 | -6.38 | -0.0478 | 11 | 82.19 | 99 | 1.05 | 6.95 |
| 25.11 | 0.233 | 2.98 | 0.102 | 0.0539 | 4.57 | 0.227 | -- | -0.05 | 12.1 | 72.9 | 41 | 2.22 | 5.2 |
| 24.73 | 0.232 | 2.98 | 0.0712 | 0.0552 | 1.73 | -- | -6.32 | -0.0468 | 11.4 | 82.35 | 114 | 1.03 | 6.93 |
| 25.32 | 0.234 | 2.98 | 0.105 | 0.054 | 4.57 | -- | -- | -0.0505 | 11.4 | 72.79 | 48 | 2.23 | 5.21 |
| 24.92 | 0.233 | 2.98 | 0.0707 | -- | 1.75 | -- | -6.31 | -0.0471 | -- | 82.44 | 117 | 1.08 | 6.93 |
| 45.46 | 0.316 | 2.98 | 0.0327 | 0.0997 | -- | -0.088 | -- | -0.0717 | 8.47 | -- | -- | -- | -- |
| 45.47 | 0.316 | 2.98 | 0.0306 | 0.0996 | -- | -- | -- | -0.0712 | 9.11 | -- | -- | -- | -- |
| 25.51 | 0.235 | 2.98 | 0.107 | -- | 4.55 | -- | -- | -0.046 | -- | 73.21 | 38 | 2.63 | 5.13 |
| 25.6 | 0.236 | 2.98 | -- | 0.057 | 4.46 | -- | -- | -0.0617 | 10.6 | 73.24 | 46 | 2.57 | 5.23 |
| 46.04 | 0.317 | 2.98 | 0.0304 | -- | -- | -- | -- | -0.0707 | -- | -- | -- | -- | -- |
| 45.49 | 0.316 | 2.98 | -- | 0.0997 | -- | -- | -- | -0.0746 | 9.09 | -- | -- | -- | -- |
| 25.82 | 0.237 | 2.98 | -- | -- | 4.5 | -- | -- | -0.0604 | -- | 73.42 | 45 | 2.61 | 5.18 |
| 46.07 | 0.317 | 2.99 | -- | -- | -- | -- | -- | -0.0741 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.88 | humidity | 80 | 90 | < th | dose dependent | rect. | 1 | 7 |
| 5 | 24.91 | humidity | 80 | 90 | < th | dose dependent | rect. | 7 | 1 |
| 33 | 24.98 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 1 |
| 37 | 25.07 | radiation | 20 | 90 | > th | dose independent | rect. | 6 | 1 |
| 51 | 25.07 | radiation | 20 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 68 | 25.10 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 202 | 25.10 | humidity | 70 | 30 | < th | dose dependent | rect. | 18 | 14 |
| 687 | 28.18 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 823 | 31.82 | radiation | 30 | 30 | < th | dose independent | sin | 11 | NA |
| 978 | 33.74 | radiation | 20 | 30 | > th | dose independent | sin | 11 | NA |
| 998 | 34.55 | humidity | 70 | 10 | < th | dose independent | sin | 11 | NA |