Os07g0208000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S15A.
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Os07g0208000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 40S ribosomal protein S15A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.44 | 0.476 | 13.8 | 0.82 | 0.883 | 0.495 | 0.602 | -1.32 | 0.223 | 19.5 | 20.1 | 2861 | -- | -- |
| 104.23 | 0.476 | 13.8 | 0.999 | 0.836 | 0.832 | 0.595 | -- | 0.26 | 19.4 | 19.4 | 2722 | -- | -- |
| 103.41 | 0.474 | 13.8 | 0.823 | 0.888 | 0.513 | -- | -1.3 | 0.225 | 19.5 | 20 | 2864 | -- | -- |
| 105.13 | 0.478 | 13.8 | 0.985 | 0.869 | 0.878 | -- | -- | 0.283 | 19.5 | 19.1 | 2798 | -- | -- |
| 144.32 | 0.56 | 13.8 | 0.868 | -- | 0.565 | -- | -1.09 | 0.237 | -- | 19.8 | 2252 | -- | -- |
| 115.41 | 0.504 | 13.7 | 1.44 | 0.869 | -- | 0.727 | -- | 0.456 | 19.6 | -- | -- | -- | -- |
| 116.88 | 0.506 | 13.7 | 1.42 | 0.869 | -- | -- | -- | 0.457 | 19.6 | -- | -- | -- | -- |
| 144.79 | 0.56 | 13.8 | 1.02 | -- | 0.835 | -- | -- | 0.273 | -- | 19.32 | 2143 | -- | -- |
| 113.08 | 0.495 | 13.8 | -- | 0.868 | 1.27 | -- | -- | 0.0375 | 19.5 | 17.34 | 47520 | -- | -- |
| 157.46 | 0.586 | 13.7 | 1.41 | -- | -- | -- | -- | 0.443 | -- | -- | -- | -- | -- |
| 169.84 | 0.61 | 13.8 | -- | 0.858 | -- | -- | -- | 0.299 | 19.7 | -- | -- | -- | -- |
| 152.88 | 0.576 | 13.8 | -- | -- | 1.27 | -- | -- | 0.0448 | -- | 16.57 | 47520 | -- | -- |
| 209.55 | 0.676 | 13.8 | -- | -- | -- | -- | -- | 0.287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.33 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 2 | 96.69 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 3 | 97.02 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 4 | 97.49 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 6 | 97.87 | wind | 5 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 7 | 98.05 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 9 | 98.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 18 | 99.26 | wind | 1 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 22 | 99.46 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 26 | 99.57 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 27 | 99.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 38 | 100.12 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 40 | 100.18 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 45 | 100.23 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 5 |
| 48 | 100.30 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 72 | 100.69 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 76 | 100.71 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 83 | 100.73 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 92 | 100.77 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 1 | 9 |
| 93 | 100.77 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 120 | 101.01 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 127 | 101.03 | wind | 5 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 135 | 101.14 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 136 | 101.14 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 153 | 101.30 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 154 | 101.31 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 164 | 101.34 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 175 | 101.37 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 215 | 101.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 259 | 101.70 | radiation | 10 | 1440 | < th | dose independent | sin | 17 | NA |
| 261 | 101.71 | wind | 1 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 264 | 101.73 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 266 | 101.74 | radiation | 10 | 1440 | < th | dose dependent | sin | 22 | NA |
| 268 | 101.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 270 | 101.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 271 | 101.78 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 8 |
| 309 | 101.91 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 18 |
| 313 | 101.93 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 319 | 101.95 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 330 | 101.99 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 347 | 102.04 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 358 | 102.08 | humidity | 90 | 10 | < th | dose independent | rect. | 2 | 7 |
| 418 | 102.26 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 427 | 102.29 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 435 | 102.31 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 448 | 102.33 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 458 | 102.36 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 19 |
| 509 | 102.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 533 | 102.56 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 534 | 102.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 536 | 102.57 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 542 | 102.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 544 | 102.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 550 | 102.60 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 555 | 102.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 556 | 102.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 562 | 102.62 | wind | 9 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 624 | 102.67 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 629 | 102.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 641 | 102.69 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 18 |
| 677 | 102.76 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 679 | 102.77 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 683 | 102.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 712 | 102.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 747 | 102.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 811 | 102.99 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 827 | 103.00 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 829 | 103.01 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 864 | 103.08 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 942 | 103.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 949 | 103.20 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 13 |