FiT-DB / Search/ Help/ Sample detail

Os07g0207700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.47 (0.0188) R2 : 0.241
β1 : 0.71 (0.0688) R2dD : 0.184 R2D : 0.203
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.166 (0.0401) R2dN8 : 0.0381 R2N8 : 0.0575
σ : 0.353
deviance : 56.99
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.31 0.291 7.47 0.707 0.482 1.16 -0.246 2.01 -0.112 8.91 0.4298 1449 -- --
40.15 0.295 7.47 0.898 0.457 0.684 -0.173 -- -0.107 8.6 0.4304 1447 -- --
38.48 0.289 7.47 0.69 0.506 1.19 -- 2.13 -0.119 9.05 0.44 1460 -- --
40.12 0.295 7.44 0.875 0.512 0.729 -- -- -0.0824 9 0.6787 1475 -- --
43.85 0.308 7.48 0.69 -- 1.26 -- 2.04 -0.0648 -- 0.6021 8167 -- --
44.62 0.313 7.46 0.718 0.461 -- -0.241 -- -0.169 8.85 -- -- -- --
44.81 0.313 7.46 0.71 0.462 -- -- -- -0.169 8.87 -- -- -- --
41.74 0.301 7.45 0.867 -- 0.878 -- -- -0.0506 -- 1.65 3858 -- --
56.11 0.349 7.47 -- 0.399 0.339 -- -- -0.193 8.45 10 2711 -- --
56.99 0.353 7.47 0.71 -- -- -- -- -0.166 -- -- -- -- --
58.11 0.357 7.48 -- 0.464 -- -- -- -0.248 8.76 -- -- -- --
57.88 0.354 7.48 -- -- 0.753 -- -- -0.211 -- 2.304 2433 -- --
70.3 0.391 7.49 -- -- -- -- -- -0.245 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.31 radiation 1e+00 4320 < th dose independent rect. 18 9
4 36.34 radiation 1e+00 4320 < th dose independent rect. 18 2
12 36.82 radiation 1e+00 4320 > th dose independent rect. 18 1
22 36.90 radiation 4e+01 4320 < th dose dependent rect. 18 9
35 37.07 humidity 9e+01 43200 < th dose independent rect. 5 1
36 37.19 radiation 1e+00 14400 < th dose dependent rect. 18 11
39 37.22 radiation 1e+00 4320 < th dose dependent rect. 18 7
43 37.23 radiation 1e+00 14400 < th dose dependent rect. 18 1
45 37.23 radiation 4e+01 4320 < th dose dependent rect. 18 3
80 37.43 radiation 1e+00 4320 > th dose dependent rect. 18 1
91 37.46 humidity 9e+01 43200 > th dose independent rect. 5 1
92 37.47 wind 7e+00 43200 < th dose dependent rect. 11 2
103 37.56 radiation 4e+01 4320 > th dose dependent rect. 13 3
119 37.56 radiation 4e+01 4320 > th dose dependent rect. 13 20
123 37.58 wind 1e+00 43200 > th dose dependent rect. 11 3
136 37.65 radiation 1e+01 1440 < th dose independent rect. 16 17
150 37.68 radiation 1e+01 4320 < th dose dependent rect. 17 17
151 37.69 radiation 1e+01 4320 < th dose dependent rect. 18 15
165 37.79 radiation 4e+01 4320 < th dose independent rect. 13 21
173 37.81 radiation 4e+01 4320 < th dose independent sin 13 NA
193 37.83 humidity 9e+01 43200 < th dose independent rect. 19 15
201 37.87 humidity 8e+01 43200 > th dose independent rect. 3 1
211 37.88 radiation 1e+01 4320 < th dose dependent rect. 2 7
213 37.89 precipitation 1e-01 14400 > th dose independent rect. 17 10
216 37.89 radiation 1e+01 4320 < th dose dependent rect. 4 5
219 37.89 wind 3e+00 43200 > th dose dependent rect. 9 7
222 37.89 radiation 1e+01 4320 < th dose dependent rect. 20 13
249 37.91 humidity 9e+01 43200 < th dose independent rect. 4 4
250 37.91 precipitation 1e-01 14400 < th dose independent rect. 17 10
252 37.91 radiation 1e+00 14400 < th dose dependent rect. 4 1
254 37.91 precipitation 1e-01 14400 < th dose dependent rect. 17 10
255 37.91 radiation 3e+01 4320 > th dose dependent rect. 15 18
260 37.93 humidity 8e+01 43200 < th dose independent rect. 3 1
261 37.93 humidity 9e+01 43200 < th dose independent rect. 20 2
266 37.94 radiation 1e+00 14400 < th dose dependent rect. 2 3
277 37.96 wind 1e+00 43200 > th dose independent rect. 8 2
283 37.97 wind 5e+00 43200 > th dose independent rect. 9 7
284 37.97 wind 5e+00 43200 < th dose independent rect. 9 7
291 37.98 radiation 4e+01 4320 < th dose independent rect. 13 3
293 37.98 radiation 4e+01 4320 < th dose independent rect. 13 6
299 37.98 radiation 4e+01 4320 < th dose independent rect. 13 14
306 37.98 radiation 4e+01 4320 > th dose dependent sin 13 NA
316 37.99 radiation 1e+01 4320 < th dose dependent sin 10 NA
327 38.01 humidity 9e+01 43200 < th dose independent sin 6 NA
330 38.01 precipitation 1e-01 14400 > th dose independent rect. 18 6
331 38.01 humidity 9e+01 43200 < th dose independent rect. 3 7
332 38.01 humidity 9e+01 43200 < th dose independent rect. 19 7
352 38.03 precipitation 1e-01 14400 < th dose independent rect. 18 6
360 38.03 precipitation 1e-01 14400 < th dose dependent rect. 18 6
376 38.05 atmosphere 1e+03 43200 < th dose dependent rect. 3 1
382 38.06 precipitation 1e-01 14400 > th dose independent rect. 13 14
383 38.06 precipitation 1e-01 14400 < th dose independent rect. 13 14
389 38.06 radiation 1e+00 14400 < th dose dependent rect. 21 8
391 38.06 precipitation 1e-01 14400 < th dose dependent rect. 13 14
392 38.07 humidity 9e+01 14400 > th dose independent rect. 1 2
395 38.07 radiation 1e+01 4320 < th dose independent rect. 2 8
402 38.07 radiation 3e+01 4320 > th dose dependent rect. 8 1
404 38.08 radiation 1e+01 4320 < th dose independent rect. 4 6
422 38.08 radiation 3e+01 14400 > th dose dependent rect. 15 2
497 38.11 humidity 9e+01 43200 < th dose independent rect. 1 11
563 38.14 wind 9e+00 43200 > th dose independent rect. 19 2
599 38.15 radiation 1e+01 4320 < th dose independent sin 11 NA
605 38.15 humidity 9e+01 14400 > th dose independent rect. 21 8
644 38.17 precipitation 1e-01 43200 > th dose independent rect. 19 1
665 38.18 radiation 2e+01 4320 < th dose independent rect. 7 1
695 38.19 humidity 9e+01 43200 > th dose independent rect. 21 2
725 38.20 humidity 9e+01 43200 > th dose independent rect. 19 15
739 38.20 wind 9e+00 43200 < th dose dependent rect. 3 13
742 38.21 precipitation 1e-01 14400 > th dose independent sin 15 NA
743 38.21 precipitation 1e-01 14400 < th dose independent sin 15 NA
756 38.21 precipitation 1e-01 14400 < th dose dependent sin 15 NA
769 38.22 wind 1e+00 43200 < th dose independent rect. 1 2
772 38.22 precipitation 1e-01 14400 > th dose independent rect. 13 11
773 38.22 precipitation 1e-01 14400 < th dose independent rect. 13 11
792 38.22 precipitation 1e-01 14400 < th dose dependent rect. 13 11
803 38.23 humidity 8e+01 43200 < th dose independent rect. 23 7
843 38.23 radiation 4e+01 4320 < th dose dependent rect. 18 16
844 38.24 humidity 9e+01 43200 < th dose independent sin 14 NA
850 38.24 humidity 8e+01 43200 > th dose independent rect. 23 7
858 38.24 humidity 8e+01 43200 < th dose dependent rect. 22 1
861 38.24 precipitation 1e-01 43200 > th dose dependent rect. 19 1
873 38.25 humidity 9e+01 43200 < th dose independent no NA NA
876 38.25 precipitation 1e-01 43200 < th dose independent rect. 19 1
897 38.25 precipitation 1e-01 43200 < th dose dependent rect. 19 1
982 38.27 radiation 1e+00 4320 > th dose dependent rect. 17 16
985 38.28 humidity 9e+01 43200 > th dose independent rect. 20 5