Os07g0207400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RF12 protein (Fragment).
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Os07g0207400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RF12 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 176.76 | 0.625 | 10.5 | 0.657 | 1.15 | -1.83 | 2.56 | -3.46 | -0.00438 | 9.45 | 28.93 | 139 | 23.1 | -- |
| 196.91 | 0.659 | 10.5 | 0.574 | 0.731 | -1.62 | -1.01 | -- | -0.036 | 7.69 | 28.93 | 139 | 23.1 | -- |
| 181.56 | 0.628 | 10.5 | 0.71 | 1.17 | -1.91 | -- | -1.35 | 0.0364 | 8.34 | 28.9 | 132 | 23.8 | -- |
| 186.48 | 0.636 | 10.5 | 0.647 | 1.19 | -1.92 | -- | -- | 0.0343 | 8.49 | 28.82 | 138 | 23.7 | -- |
| 197 | 0.654 | 10.5 | 0.673 | -- | -1.14 | -- | -1.72 | 0.0131 | -- | 28.7 | 52 | 0.674 | -- |
| 221.23 | 0.697 | 10.5 | 0.686 | 1.06 | -- | 1.65 | -- | 0.0592 | 16.6 | -- | -- | -- | -- |
| 228.47 | 0.708 | 10.5 | 0.697 | 1.07 | -- | -- | -- | 0.0678 | 16.6 | -- | -- | -- | -- |
| 204.81 | 0.667 | 10.5 | 0.655 | -- | -1.19 | -- | -- | 0.0266 | -- | 28.7 | 59 | 0.616 | -- |
| 195.68 | 0.652 | 10.5 | -- | 1.09 | -1.86 | -- | -- | -0.0403 | 8.47 | 28.9 | 136 | 23.8 | -- |
| 289 | 0.794 | 10.5 | 0.656 | -- | -- | -- | -- | 0.0398 | -- | -- | -- | -- | -- |
| 241.25 | 0.727 | 10.5 | -- | 1.05 | -- | -- | -- | -0.00979 | 16.6 | -- | -- | -- | -- |
| 214.94 | 0.683 | 10.5 | -- | -- | -1.24 | -- | -- | 0.00375 | -- | 28.3 | 118 | 1.04 | -- |
| 300.34 | 0.809 | 10.5 | -- | -- | -- | -- | -- | -0.0329 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 183.13 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 184.57 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 3 | 184.92 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 51 | 188.87 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 57 | 189.19 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 88 | 189.92 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 111 | 190.64 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 204 | 192.99 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 15 |
| 216 | 193.13 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 222 | 193.23 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 1 |
| 230 | 193.35 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 255 | 193.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 303 | 194.20 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 316 | 194.35 | temperature | 30 | 90 | < th | dose independent | sin | 5 | NA |
| 335 | 194.54 | radiation | 30 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 345 | 194.61 | radiation | 40 | 90 | < th | dose independent | rect. | 4 | 15 |
| 366 | 194.85 | temperature | 30 | 90 | > th | dose independent | sin | 5 | NA |
| 398 | 195.28 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 7 |
| 437 | 195.38 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 477 | 195.65 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 1 |
| 494 | 195.86 | radiation | 20 | 90 | > th | dose dependent | sin | 4 | NA |
| 509 | 196.03 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 603 | 196.34 | radiation | 40 | 10 | < th | dose independent | rect. | 4 | 16 |
| 621 | 196.45 | radiation | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 634 | 196.54 | radiation | 30 | 270 | > th | dose dependent | sin | 10 | NA |
| 649 | 196.64 | radiation | 20 | 90 | > th | dose dependent | no | NA | NA |
| 757 | 196.67 | radiation | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 791 | 196.76 | radiation | 40 | 270 | > th | dose independent | sin | 11 | NA |
| 984 | 197.40 | radiation | 40 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 998 | 197.47 | radiation | 40 | 270 | < th | dose independent | sin | 11 | NA |