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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0205900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.33 (0.043) R2 : 0.00308
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.108 (0.0906) R2dN8 : 0.00398 R2N8 : 0.00308
σ : 0.81
deviance : 301.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
270.59 0.773 3.27 0.538 0.286 -1.06 0.463 -0.868 0.121 3.69 999.3 106 -- --
271.28 0.767 3.27 0.504 0.278 -1.13 0.461 -- 0.128 3.72 998.1 141 -- --
271.17 0.767 3.27 0.532 0.287 -1.05 -- -0.847 0.117 4.04 999.3 134 -- --
271.69 0.768 3.27 0.491 0.283 -1.18 -- -- 0.114 4 996.3 164 -- --
275.52 0.773 3.27 0.533 -- -1.05 -- -0.777 0.117 -- 998.2 176 -- --
288.38 0.796 3.31 0.573 0.246 -- 0.405 -- -0.0478 3.01 -- -- -- --
288.9 0.796 3.31 0.564 0.251 -- -- -- -0.0504 3.36 -- -- -- --
275.85 0.774 3.27 0.502 -- -1.18 -- -- 0.12 -- 995.7 251 -- --
277.97 0.777 3.28 -- 0.291 -1.27 -- -- 0.0741 4.06 996.1 170 -- --
292.46 0.799 3.31 0.575 -- -- -- -- -0.0438 -- -- -- -- --
297.29 0.807 3.33 -- 0.262 -- -- -- -0.113 3.35 -- -- -- --
282.31 0.783 3.28 -- -- -1.28 -- -- 0.0783 -- 994.5 393 -- --
301.18 0.81 3.33 -- -- -- -- -- -0.108 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 265.09 atmosphere 995 270 > th dose dependent rect. 21 12
3 265.27 atmosphere 1010 90 < th dose dependent rect. 16 19
4 265.55 atmosphere 1010 10 < th dose dependent rect. 17 17
6 265.73 atmosphere 1010 90 < th dose dependent rect. 16 17
7 265.82 atmosphere 995 720 > th dose dependent rect. 20 6
15 266.48 atmosphere 1010 270 < th dose dependent rect. 14 19
19 266.63 atmosphere 1000 30 > th dose dependent rect. 14 23
29 266.92 atmosphere 1010 10 < th dose dependent rect. 17 15
31 266.98 atmosphere 1000 270 > th dose dependent rect. 14 19
41 267.23 atmosphere 1010 90 < th dose dependent sin 9 NA
42 267.23 atmosphere 1010 270 < th dose dependent sin 11 NA
47 267.29 atmosphere 1000 90 > th dose dependent sin 8 NA
95 267.97 atmosphere 1015 720 < th dose dependent rect. 16 12
186 268.98 atmosphere 1010 270 < th dose dependent rect. 21 11
224 269.29 atmosphere 1015 90 < th dose dependent rect. 1 23
269 269.62 atmosphere 995 720 > th dose dependent rect. 14 12
312 269.86 atmosphere 1000 30 > th dose dependent rect. 21 23
345 270.08 atmosphere 1010 10 < th dose dependent rect. 14 22
397 270.32 atmosphere 1000 30 > th dose dependent rect. 23 23
479 270.62 atmosphere 1000 90 > th dose dependent no NA NA
520 270.74 atmosphere 1005 720 > th dose independent rect. 21 5
529 270.76 atmosphere 1015 270 < th dose dependent rect. 22 23
556 270.83 atmosphere 995 270 > th dose dependent rect. 3 23
583 270.90 atmosphere 1000 30 > th dose dependent rect. 21 16
609 270.96 atmosphere 1010 270 < th dose dependent rect. 19 23
627 271.01 atmosphere 1010 270 < th dose dependent no NA NA
647 271.07 atmosphere 995 270 > th dose dependent rect. 18 23
754 271.35 atmosphere 1000 90 > th dose dependent rect. 6 23
770 271.40 radiation 20 10 > th dose independent rect. 15 17
789 271.43 atmosphere 1015 720 < th dose dependent rect. 9 19
791 271.43 atmosphere 1015 30 < th dose dependent rect. 9 23
867 271.65 atmosphere 1010 270 < th dose dependent rect. 5 23
893 271.71 atmosphere 1000 30 > th dose dependent rect. 3 23
928 271.78 atmosphere 1010 90 < th dose dependent rect. 1 8
989 271.90 atmosphere 1010 90 < th dose dependent rect. 1 10