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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0203800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.72 (0.0458) R2 : 0.00597
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.16 (0.0965) R2dN8 : 0.00771 R2N8 : 0.00597
σ : 0.863
deviance : 342.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
314.8 0.834 3.67 0.547 0.0804 0.81 -0.727 0.0945 0.0704 13.9 91 1665 -- --
314.79 0.826 3.67 0.553 0.0881 0.807 -0.736 -- 0.0745 13.9 91 1716 -- --
316.75 0.829 3.67 0.516 0.0891 0.813 -- 0.139 0.0702 13.2 91.28 1732 -- --
316.79 0.829 3.67 0.528 0.0884 0.815 -- -- 0.071 13.1 91.33 1732 -- --
317.22 0.83 3.67 0.509 -- 0.789 -- 0.18 0.0655 -- 91.56 1732 -- --
327.02 0.848 3.7 0.715 0.0114 -- 0.836 -- -0.078 2.86 -- -- -- --
328.81 0.849 3.7 0.695 0.105 -- -- -- -0.0839 7.97 -- -- -- --
317.27 0.83 3.67 0.529 -- 0.794 -- -- 0.0654 -- 91.26 1732 -- --
323.72 0.838 3.68 -- 0.0941 0.959 -- -- 0.0378 13.3 91.11 1732 -- --
329.42 0.848 3.71 0.696 -- -- -- -- -0.0826 -- -- -- -- --
341.55 0.865 3.72 -- 0.111 -- -- -- -0.161 7.53 -- -- -- --
324.23 0.839 3.68 -- -- 0.938 -- -- 0.0368 -- 91.71 1732 -- --
342.2 0.863 3.72 -- -- -- -- -- -0.16 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 311.97 precipitation 0.1 90 > th dose independent rect. 10 10
4 312.09 temperature 20.0 270 < th dose independent rect. 6 2
7 312.91 humidity 90.0 1440 > th dose independent rect. 2 17
9 313.20 precipitation 0.1 90 > th dose independent rect. 13 7
30 314.10 precipitation 0.1 90 > th dose dependent rect. 10 10
39 314.27 humidity 90.0 1440 > th dose independent rect. 2 10
45 314.42 wind 3.0 90 > th dose independent rect. 2 8
53 314.74 humidity 70.0 4320 < th dose independent rect. 14 2
55 314.75 humidity 80.0 4320 > th dose dependent rect. 6 5
68 314.82 humidity 90.0 1440 > th dose independent sin 3 NA
69 314.83 humidity 70.0 4320 > th dose independent rect. 14 2
70 314.85 humidity 90.0 4320 < th dose independent rect. 7 2
75 314.91 humidity 90.0 1440 > th dose dependent rect. 2 18
78 314.97 precipitation 0.1 90 > th dose dependent rect. 10 8
82 314.99 humidity 70.0 4320 > th dose dependent rect. 10 1
87 315.04 wind 3.0 90 > th dose independent rect. 6 4
93 315.05 humidity 80.0 4320 > th dose independent rect. 10 1
95 315.07 humidity 90.0 720 > th dose independent rect. 3 1
107 315.13 humidity 70.0 4320 > th dose dependent rect. 6 8
113 315.18 humidity 80.0 4320 < th dose independent rect. 10 1
115 315.20 humidity 70.0 4320 > th dose independent rect. 11 5
124 315.26 temperature 20.0 1440 > th dose independent rect. 21 5
154 315.43 wind 1.0 90 > th dose independent rect. 23 12
156 315.43 precipitation 0.1 90 > th dose dependent rect. 13 7
160 315.45 temperature 20.0 1440 > th dose independent rect. 20 10
166 315.48 temperature 20.0 1440 < th dose independent rect. 21 5
174 315.50 temperature 20.0 1440 < th dose independent rect. 20 10
183 315.52 temperature 20.0 1440 > th dose independent rect. 24 1
184 315.52 temperature 20.0 1440 > th dose independent rect. 20 16
186 315.52 temperature 20.0 1440 > th dose independent rect. 20 20
198 315.55 humidity 90.0 720 < th dose independent rect. 24 14
204 315.56 humidity 90.0 1440 < th dose independent rect. 1 11
210 315.59 temperature 20.0 1440 < th dose independent rect. 24 1
236 315.65 wind 1.0 720 > th dose independent rect. 23 2
245 315.66 temperature 20.0 1440 < th dose independent rect. 20 16
252 315.68 temperature 20.0 1440 < th dose independent rect. 20 20
293 315.79 humidity 90.0 720 < th dose independent sin 7 NA
298 315.80 humidity 80.0 4320 > th dose independent rect. 6 9
302 315.81 humidity 90.0 720 < th dose independent rect. 20 17
310 315.82 humidity 90.0 1440 < th dose independent rect. 1 16
313 315.83 humidity 90.0 1440 < th dose independent rect. 1 18
315 315.83 temperature 20.0 1440 > th dose independent rect. 10 20
335 315.87 temperature 20.0 1440 > th dose independent rect. 21 2
341 315.87 humidity 90.0 1440 > th dose dependent sin 1 NA
352 315.89 temperature 20.0 1440 < th dose independent rect. 10 20
356 315.90 humidity 90.0 720 > th dose independent rect. 23 11
376 315.93 humidity 90.0 1440 > th dose independent rect. 18 20
378 315.94 temperature 20.0 1440 > th dose independent sin 12 NA
389 315.95 humidity 90.0 1440 > th dose independent rect. 18 18
401 315.97 temperature 20.0 1440 > th dose independent rect. 14 16
402 315.97 humidity 90.0 720 < th dose independent rect. 22 16
408 315.98 humidity 80.0 4320 > th dose independent rect. 8 4
409 315.98 humidity 80.0 4320 < th dose independent rect. 6 9
416 315.99 humidity 90.0 1440 > th dose independent rect. 16 20
418 315.99 humidity 90.0 1440 > th dose independent rect. 16 22
420 315.99 humidity 90.0 1440 > th dose independent rect. 18 23
434 316.02 humidity 90.0 1440 < th dose independent sin 4 NA
444 316.02 temperature 20.0 1440 < th dose independent rect. 14 16
464 316.03 temperature 20.0 1440 < th dose dependent rect. 1 1
478 316.05 temperature 20.0 1440 < th dose independent sin 12 NA
483 316.05 wind 5.0 30 > th dose independent rect. 23 11
503 316.08 humidity 90.0 4320 > th dose independent rect. 7 2
510 316.08 wind 3.0 90 > th dose dependent rect. 6 4
532 316.10 precipitation 0.1 90 > th dose dependent sin 22 NA
563 316.12 humidity 90.0 1440 > th dose independent rect. 13 23
578 316.14 precipitation 0.1 90 < th dose independent sin 21 NA
584 316.14 precipitation 0.1 90 < th dose dependent sin 21 NA
606 316.17 humidity 90.0 1440 > th dose independent no NA NA
692 316.26 precipitation 0.1 90 > th dose independent sin 22 NA
727 316.29 temperature 20.0 1440 > th dose independent rect. 3 23
738 316.30 temperature 20.0 1440 > th dose independent rect. 14 22
739 316.30 humidity 90.0 1440 > th dose independent rect. 8 23
743 316.30 humidity 80.0 1440 > th dose dependent rect. 2 7
770 316.33 humidity 70.0 4320 > th dose independent rect. 24 16
804 316.35 humidity 80.0 4320 < th dose independent rect. 6 12
810 316.35 precipitation 0.1 90 > th dose dependent rect. 13 5
839 316.37 wind 3.0 90 > th dose dependent rect. 3 7
867 316.39 humidity 70.0 4320 > th dose dependent sin 2 NA
869 316.40 temperature 20.0 1440 > th dose independent no NA NA
895 316.41 temperature 20.0 1440 < th dose independent rect. 14 22
939 316.45 temperature 30.0 720 < th dose dependent rect. 23 2
971 316.47 temperature 20.0 1440 < th dose independent rect. 3 23