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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0203500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.0259) R2 : 0.0155
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.146 (0.0545) R2dN8 : 0.02 R2N8 : 0.0155
σ : 0.487
deviance : 109.05
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.42 0.43 3.54 -2.31 0.0646 93.7 0.0828 -543 0.164 5.25 1000 10 1 1
96.98 0.462 3.15 0.0513 0.0646 2.4 0.0798 -- 0.164 5.27 1000 10 1 1
85.43 0.434 3.54 -2.31 0.0652 93.7 -- -543 0.164 5.44 1000 11 1.02 2.2
96.99 0.462 3.15 0.0514 0.0652 2.41 -- -- 0.164 5.44 1000 10 1 1
85.65 0.433 3.54 -2.3 -- 93.7 -- -543 0.166 -- 1000 11 1.03 2.18
108.27 0.488 3.15 0.0784 0.0944 -- 0.202 -- 0.153 3.94 -- -- -- --
108.38 0.488 3.15 0.0758 0.0964 -- -- -- 0.152 4.2 -- -- -- --
97.22 0.461 3.15 0.0534 -- 2.42 -- -- 0.165 -- 1000 10 1 1
97.06 0.461 3.15 -- 0.066 2.41 -- -- 0.158 5.41 1000 12 1.09 1.13
108.89 0.488 3.15 0.0797 -- -- -- -- 0.155 -- -- -- -- --
108.53 0.487 3.15 -- 0.0979 -- -- -- 0.144 4.19 -- -- -- --
97.29 0.461 3.15 -- -- 2.43 -- -- 0.16 -- 1000 10 1 1
109.05 0.487 3.15 -- -- -- -- -- 0.146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.42 atmosphere 1000.0 10 < th dose independent rect. 1 1
8 85.42 atmosphere 1000.0 10 < th dose dependent rect. 1 1
52 99.92 atmosphere 1000.0 10 < th dose independent rect. 1 7
76 101.54 atmosphere 1000.0 10 < th dose dependent rect. 1 8
85 101.88 atmosphere 1010.0 10 < th dose dependent rect. 2 1
113 103.16 wind 1.0 720 < th dose dependent rect. 16 5
119 103.29 wind 1.0 720 < th dose dependent rect. 19 2
131 103.41 wind 1.0 720 < th dose dependent rect. 14 7
162 103.89 atmosphere 1000.0 30 > th dose independent rect. 3 23
179 104.09 wind 3.0 30 < th dose dependent rect. 1 2
189 104.29 wind 3.0 30 < th dose independent rect. 1 2
194 104.34 wind 1.0 720 < th dose independent rect. 19 2
199 104.45 wind 9.0 4320 < th dose independent rect. 3 1
201 104.46 wind 9.0 10 < th dose independent rect. 3 23
204 104.48 wind 3.0 10 < th dose dependent rect. 23 4
206 104.49 temperature 10.0 30 > th dose dependent rect. 3 22
209 104.52 temperature 20.0 30 > th dose dependent rect. 1 2
228 104.61 wind 1.0 10 > th dose independent rect. 2 1
247 104.71 atmosphere 1005.0 90 > th dose dependent rect. 2 1
254 104.74 atmosphere 1005.0 10 > th dose dependent rect. 2 1
263 104.78 atmosphere 1005.0 10 > th dose independent rect. 2 1
267 104.79 wind 3.0 270 < th dose dependent rect. 22 1
278 104.82 temperature 10.0 10 > th dose independent rect. 2 1
280 104.82 temperature 25.0 10 < th dose independent rect. 2 1
282 104.82 humidity 50.0 10 > th dose independent rect. 2 1
285 104.82 atmosphere 995.0 10 > th dose independent rect. 2 1
286 104.82 atmosphere 1010.0 10 < th dose independent rect. 2 1
288 104.82 radiation 1.0 10 < th dose independent rect. 2 1
293 104.82 precipitation 0.1 10 < th dose independent rect. 2 1
295 104.82 temperature 10.0 10 > th dose independent rect. 3 23
296 104.82 radiation 1.0 10 < th dose dependent rect. 2 1
301 104.82 precipitation 0.1 10 < th dose dependent rect. 2 1
303 104.83 temperature 10.0 1440 > th dose independent rect. 3 1
306 104.83 temperature 30.0 1440 < th dose independent rect. 3 1
310 104.83 humidity 50.0 1440 > th dose independent rect. 3 1
319 104.83 atmosphere 995.0 1440 > th dose independent rect. 3 1
320 104.83 radiation 1.0 1440 < th dose independent rect. 3 1
340 104.83 temperature 10.0 1440 > th dose independent rect. 4 23
346 104.83 radiation 1.0 1440 < th dose dependent rect. 3 1
358 104.84 humidity 50.0 10 > th dose dependent rect. 2 1
371 104.85 temperature 30.0 10 < th dose dependent rect. 2 1
382 104.87 humidity 90.0 10 > th dose independent rect. 2 1
435 104.91 temperature 25.0 90 > th dose independent rect. 2 1
444 104.92 precipitation 0.1 10 < th dose independent rect. 3 23
449 104.92 precipitation 0.1 10 < th dose dependent rect. 3 23
451 104.93 humidity 90.0 10 > th dose independent rect. 24 3
474 105.00 wind 3.0 270 < th dose independent rect. 21 5
497 105.08 temperature 25.0 10 < th dose independent rect. 24 3
504 105.12 atmosphere 1000.0 270 < th dose independent sin 11 NA
514 105.14 wind 3.0 270 < th dose dependent rect. 21 4
523 105.18 atmosphere 1000.0 270 > th dose independent sin 10 NA
530 105.21 atmosphere 1000.0 30 > th dose independent rect. 21 14
536 105.23 atmosphere 1000.0 720 > th dose independent rect. 21 8
578 105.31 atmosphere 1000.0 10 > th dose independent sin 8 NA
580 105.31 precipitation 0.1 30 > th dose independent rect. 22 2
590 105.31 precipitation 0.1 30 > th dose dependent rect. 22 2
604 105.33 atmosphere 1000.0 10 < th dose independent sin 8 NA
633 105.35 wind 1.0 10 < th dose independent rect. 23 1
638 105.35 wind 1.0 10 < th dose dependent rect. 23 1
658 105.38 atmosphere 1000.0 30 > th dose independent rect. 12 23
661 105.39 humidity 50.0 10 > th dose independent rect. 3 23
667 105.40 wind 1.0 720 < th dose dependent rect. 11 10
671 105.42 atmosphere 1000.0 270 > th dose independent rect. 18 13
688 105.45 atmosphere 1000.0 10 > th dose independent rect. 24 11
704 105.47 wind 9.0 270 < th dose dependent rect. 14 12
706 105.48 wind 1.0 720 < th dose independent rect. 16 5
710 105.49 wind 3.0 270 < th dose dependent rect. 7 19
712 105.50 wind 1.0 720 < th dose independent rect. 14 7
713 105.50 wind 1.0 720 > th dose independent rect. 11 12
725 105.51 wind 9.0 30 < th dose dependent rect. 3 23
734 105.52 wind 1.0 720 < th dose dependent rect. 8 13
739 105.53 wind 1.0 720 > th dose independent rect. 10 14
812 105.60 wind 1.0 10 < th dose independent rect. 7 20
819 105.61 wind 1.0 10 < th dose independent rect. 23 4
822 105.61 wind 1.0 720 > th dose independent rect. 12 10
884 105.65 atmosphere 1000.0 270 > th dose independent rect. 21 11
896 105.67 wind 3.0 270 < th dose independent rect. 14 12
900 105.67 wind 3.0 270 < th dose independent rect. 8 18
907 105.68 wind 3.0 10 < th dose dependent rect. 16 11
929 105.70 temperature 25.0 10 < th dose independent rect. 11 16
946 105.71 wind 3.0 30 < th dose dependent rect. 11 16