Os07g0203300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os07g0203300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.7 | 0.525 | 10.5 | 0.843 | 2.29 | 1.21 | 1.25 | 1.21 | 0.217 | 18.7 | 10.12 | 128 | -- | -- |
| 126.42 | 0.524 | 10.5 | 0.876 | 2.26 | 1.11 | 1.09 | -- | 0.229 | 18.7 | 8.358 | 156 | -- | -- |
| 127.95 | 0.527 | 10.5 | 0.848 | 2.26 | 1.18 | -- | 1.11 | 0.22 | 18.7 | 8.182 | 156 | -- | -- |
| 129.65 | 0.53 | 10.5 | 0.836 | 2.24 | 1.11 | -- | -- | 0.223 | 18.7 | 7.111 | 167 | -- | -- |
| 219.35 | 0.69 | 10.5 | 0.654 | -- | 2.55 | -- | 0.35 | -0.0167 | -- | -10.04 | 664 | -- | -- |
| 144.94 | 0.564 | 10.5 | 0.866 | 2.43 | -- | 1.22 | -- | 0.278 | 17.8 | -- | -- | -- | -- |
| 148.61 | 0.571 | 10.5 | 0.858 | 2.43 | -- | -- | -- | 0.283 | 17.8 | -- | -- | -- | -- |
| 219.44 | 0.69 | 10.5 | 0.668 | -- | 2.58 | -- | -- | -0.000397 | -- | -12 | 655 | -- | -- |
| 147.65 | 0.566 | 10.5 | -- | 2.17 | 1.15 | -- | -- | 0.114 | 18.9 | 5.5 | 201 | -- | -- |
| 455.86 | 0.998 | 10.4 | 0.783 | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
| 168.01 | 0.606 | 10.5 | -- | 2.42 | -- | -- | -- | 0.187 | 17.8 | -- | -- | -- | -- |
| 231.2 | 0.708 | 10.5 | -- | -- | 2.6 | -- | -- | -0.0764 | -- | -9.08 | 655 | -- | -- |
| 472.04 | 1.01 | 10.5 | -- | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.84 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 2 | 113.11 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 3 | 113.36 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 5 | 113.44 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 21 |
| 8 | 113.75 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 19 |
| 10 | 114.01 | humidity | 90.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 12 | 114.08 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 9 | 6 |
| 18 | 114.30 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 19 | 114.36 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 52 | 114.67 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 53 | 114.70 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 57 | 114.81 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 61 | 114.92 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 6 |
| 67 | 115.09 | wind | 5.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 76 | 115.34 | radiation | 10.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 84 | 115.55 | wind | 9.0 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 91 | 115.71 | temperature | 10.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 93 | 115.71 | temperature | 30.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 94 | 115.71 | humidity | 50.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 96 | 115.71 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 97 | 115.71 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 98 | 115.71 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 21 |
| 100 | 115.76 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 3 |
| 101 | 115.76 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 112 | 116.07 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 6 | 2 |
| 132 | 116.34 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 133 | 116.35 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 136 | 116.35 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 137 | 116.35 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 138 | 116.35 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 142 | 116.37 | radiation | 30.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 145 | 116.44 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 150 | 116.52 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 155 | 116.55 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 6 | 3 |
| 157 | 116.63 | wind | 1.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 158 | 116.63 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 3 |
| 159 | 116.63 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 168 | 116.75 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 169 | 116.76 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 16 |
| 173 | 116.80 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 178 | 116.88 | radiation | 1.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 181 | 116.90 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 183 | 116.91 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 186 | 116.91 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 188 | 116.91 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 189 | 116.91 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 192 | 116.91 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 204 | 117.05 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 3 |
| 208 | 117.12 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 21 |
| 217 | 117.23 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 21 |
| 218 | 117.23 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 21 |
| 230 | 117.34 | radiation | 30.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 250 | 117.52 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 5 |
| 251 | 117.52 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 254 | 117.54 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 21 |
| 255 | 117.54 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 21 |
| 257 | 117.59 | radiation | 1.0 | 90 | > th | dose independent | sin | 10 | NA |
| 261 | 117.61 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 283 | 117.83 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 10 |
| 309 | 118.03 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 10 |
| 312 | 118.08 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 319 | 118.15 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 321 | 118.15 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 322 | 118.15 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 324 | 118.15 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 325 | 118.15 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 327 | 118.16 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 19 |
| 329 | 118.16 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 19 |
| 331 | 118.20 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 344 | 118.30 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 374 | 118.49 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 7 |
| 377 | 118.54 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 4 |
| 378 | 118.54 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 381 | 118.57 | radiation | 1.0 | 90 | < th | dose dependent | sin | 10 | NA |
| 385 | 118.60 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 12 |
| 425 | 118.75 | radiation | 1.0 | 90 | < th | dose independent | sin | 10 | NA |
| 444 | 118.92 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 446 | 118.94 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 472 | 119.02 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 479 | 119.06 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 486 | 119.10 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 6 | 3 |
| 488 | 119.10 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 516 | 119.21 | wind | 9.0 | 1440 | < th | dose independent | rect. | 7 | 2 |
| 529 | 119.22 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 533 | 119.24 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 547 | 119.28 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 16 |
| 560 | 119.35 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 7 |
| 584 | 119.47 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 593 | 119.53 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 7 |
| 598 | 119.58 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 624 | 119.63 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 627 | 119.64 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 18 | 13 |
| 677 | 119.82 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 698 | 119.93 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 708 | 119.98 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 737 | 120.17 | radiation | 10.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 744 | 120.19 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 760 | 120.28 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 766 | 120.31 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 21 |
| 769 | 120.34 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 14 |
| 799 | 120.43 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 802 | 120.44 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 804 | 120.45 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 21 |
| 821 | 120.54 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 832 | 120.59 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 876 | 120.74 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 22 | 8 |
| 877 | 120.74 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 17 |
| 893 | 120.79 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 10 |
| 923 | 120.87 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 945 | 120.97 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 6 |
| 965 | 121.02 | radiation | 10.0 | 270 | > th | dose independent | rect. | 16 | 22 |