Os07g0200900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0200900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.89 | 0.393 | 6.45 | 0.194 | 1.02 | -1.72 | -0.555 | -1.42 | 0.299 | 22.1 | 22.98 | 539 | -- | -- |
| 71.79 | 0.395 | 6.47 | 0.027 | 1.03 | -1.45 | -0.336 | -- | 0.259 | 22.1 | 23.49 | 561 | -- | -- |
| 70.98 | 0.392 | 6.45 | 0.19 | 1.03 | -1.67 | -- | -1.14 | 0.294 | 22.1 | 23.1 | 523 | -- | -- |
| 72.22 | 0.396 | 6.47 | 0.0272 | 1.02 | -1.46 | -- | -- | 0.253 | 22 | 23.46 | 572 | -- | -- |
| 122.61 | 0.516 | 6.48 | -0.0746 | -- | -1.85 | -- | -0.136 | 0.101 | -- | 26.91 | 731 | -- | -- |
| 99.29 | 0.467 | 6.42 | 0.397 | 1.16 | -- | -0.369 | -- | 0.5 | 21.9 | -- | -- | -- | -- |
| 99.81 | 0.468 | 6.42 | 0.412 | 1.16 | -- | -- | -- | 0.502 | 21.9 | -- | -- | -- | -- |
| 122.64 | 0.516 | 6.48 | -0.104 | -- | -1.86 | -- | -- | 0.0926 | -- | 27.04 | 729 | -- | -- |
| 72.24 | 0.396 | 6.48 | -- | 1.02 | -1.46 | -- | -- | 0.249 | 22 | 23.48 | 581 | -- | -- |
| 180.72 | 0.628 | 6.39 | 0.425 | -- | -- | -- | -- | 0.501 | -- | -- | -- | -- | -- |
| 104.28 | 0.478 | 6.43 | -- | 1.16 | -- | -- | -- | 0.456 | 21.9 | -- | -- | -- | -- |
| 122.9 | 0.516 | 6.48 | -- | -- | -1.81 | -- | -- | 0.111 | -- | 26.98 | 726 | -- | -- |
| 185.47 | 0.636 | 6.4 | -- | -- | -- | -- | -- | 0.454 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 2 | 68.48 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 13 |
| 13 | 69.60 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 22 |
| 26 | 70.16 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 18 |
| 27 | 70.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 17 |
| 36 | 70.34 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 21 |
| 41 | 70.39 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 17 |
| 54 | 70.48 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 96 | 70.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 130 | 71.15 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 178 | 71.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 208 | 71.69 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 242 | 71.85 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 284 | 72.16 | temperature | 20 | 720 | < th | dose independent | rect. | 7 | 23 |
| 303 | 72.25 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 23 |
| 304 | 72.26 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 308 | 72.29 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 317 | 72.36 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 6 |
| 318 | 72.36 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 323 | 72.38 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 327 | 72.40 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 380 | 72.72 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 409 | 72.89 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 427 | 72.96 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 432 | 72.97 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 470 | 73.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 477 | 73.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 604 | 73.76 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 14 |
| 658 | 73.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 8 |
| 787 | 74.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 3 |
| 839 | 74.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 863 | 74.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 3 |
| 928 | 74.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 2 |