Os07g0199000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0199000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.44 | 0.662 | 6.62 | 2.51 | 0.848 | 1.94 | 0.677 | -1.51 | 1.28 | 7.9 | 31.4 | 348 | -- | -- |
| 200.82 | 0.66 | 6.62 | 2.34 | 0.818 | 2.1 | 0.279 | -- | 1.31 | 8.34 | 30.9 | 324 | -- | -- |
| 199.5 | 0.658 | 6.63 | 2.48 | 0.846 | 1.99 | -- | -1.16 | 1.27 | 8.17 | 31.5 | 332 | -- | -- |
| 200.69 | 0.66 | 6.65 | 2.28 | 0.844 | 1.97 | -- | -- | 1.22 | 8.23 | 31.3 | 320 | -- | -- |
| 227.62 | 0.703 | 6.62 | 2.72 | -- | 2.69 | -- | -1.75 | 1.37 | -- | 32.7 | 465 | -- | -- |
| 246.29 | 0.736 | 6.72 | 1.79 | 1.32 | -- | 0.87 | -- | 0.875 | 6.92 | -- | -- | -- | -- |
| 248.24 | 0.738 | 6.72 | 1.81 | 1.32 | -- | -- | -- | 0.873 | 6.95 | -- | -- | -- | -- |
| 229.06 | 0.705 | 6.65 | 2.43 | -- | 2.64 | -- | -- | 1.33 | -- | 32.01 | 451 | -- | -- |
| 323.12 | 0.837 | 6.75 | -- | 1.1 | 0.977 | -- | -- | 0.789 | 7.3 | 43.63 | 314 | -- | -- |
| 339.34 | 0.861 | 6.75 | 1.84 | -- | -- | -- | -- | 0.898 | -- | -- | -- | -- | -- |
| 334.47 | 0.855 | 6.77 | -- | 1.34 | -- | -- | -- | 0.672 | 6.87 | -- | -- | -- | -- |
| 372.44 | 0.899 | 6.75 | -- | -- | 1.85 | -- | -- | 0.91 | -- | 51.16 | 415 | -- | -- |
| 428.26 | 0.966 | 6.8 | -- | -- | -- | -- | -- | 0.694 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 193.87 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 2 | 194.07 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 3 | 194.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 60 | 195.61 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 85 | 195.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 111 | 196.33 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 131 | 196.50 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 183 | 196.89 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 200 | 197.01 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 235 | 197.24 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 261 | 197.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 293 | 197.60 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 307 | 197.64 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 308 | 197.64 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 342 | 197.78 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 448 | 198.44 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 570 | 199.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 691 | 199.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 2 |
| 826 | 200.10 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 864 | 200.21 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 893 | 200.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 898 | 200.29 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 13 |
| 908 | 200.32 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 914 | 200.34 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 9 |
| 919 | 200.36 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 2 |
| 924 | 200.37 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 967 | 200.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 982 | 200.51 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 997 | 200.54 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 13 |