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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0197400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.67 (0.0401) R2 : 0.507
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.99 (0.107) R2dC : 0.394 R2C : 0.271
β3 : -1.39 (0.112) R2dE : 0.174 R2E : 0.0319
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.569 (0.0843) R2dN8 : 0.0635 R2N8 : 0.0508
σ : 0.752
deviance : 260.94
__
_____
C
peak time of C : 6.9
E
wheather : temperature
threshold : 12.23
memory length : 57
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 22.9
open length of G : 6.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
257.39 0.754 5.68 0.0718 1.96 -1.33 -0.0133 -1.49 0.578 7.04 13.55 36 23 6.05
260.37 0.752 5.67 0.137 1.98 -1.38 -0.063 -- 0.579 6.92 12.29 54 22.9 6.08
257.15 0.747 5.68 0.0622 1.97 -1.33 -- -1.49 0.578 6.99 12.98 43 22.9 6.08
260.33 0.751 5.67 0.158 1.99 -1.39 -- -- 0.589 6.91 12.52 56 22.9 6.12
419.41 0.954 5.71 0.105 -- -1.27 -- -1.7 0.638 -- 6.147 40 22.6 4.7
299.5 0.811 5.67 0.0462 1.88 -- 0.363 -- 0.583 8.79 -- -- -- --
299.94 0.811 5.67 0.0579 1.88 -- -- -- 0.583 8.77 -- -- -- --
293.08 0.797 5.77 0.239 -- -1.9 -- -- 0.593 -- -42.08 385 10.4 14.1
260.94 0.752 5.67 -- 1.99 -1.39 -- -- 0.569 6.9 12.23 57 22.9 6.1
500.97 1.05 5.72 0.0603 -- -- -- -- 0.598 -- -- -- -- --
300.03 0.81 5.67 -- 1.88 -- -- -- 0.577 8.77 -- -- -- --
285.93 0.788 5.73 -- -- -1.86 -- -- 0.56 -- -135.7 322 10.2 15.2
501.06 1.04 5.72 -- -- -- -- -- 0.591 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 257.84 temperature 15.0 30 > th dose dependent rect. 23 6
5 261.23 temperature 15.0 270 > th dose dependent rect. 22 4
6 261.71 temperature 20.0 270 > th dose independent rect. 21 5
7 261.75 humidity 80.0 30 > th dose independent rect. 23 6
10 262.39 temperature 15.0 270 > th dose dependent rect. 23 2
15 263.01 radiation 40.0 30 < th dose independent rect. 5 18
31 264.40 humidity 50.0 30 > th dose dependent rect. 23 6
35 264.58 temperature 10.0 30 > th dose dependent rect. 5 18
43 265.28 temperature 20.0 270 > th dose independent rect. 21 16
53 265.72 wind 9.0 30 < th dose independent rect. 23 6
55 265.75 temperature 10.0 30 > th dose independent rect. 23 6
56 265.75 temperature 30.0 30 < th dose independent rect. 23 6
57 265.75 humidity 50.0 30 > th dose independent rect. 23 6
60 265.75 atmosphere 995.0 30 > th dose independent rect. 23 6
61 265.75 radiation 1.0 30 < th dose independent rect. 23 6
66 265.75 temperature 10.0 30 > th dose independent rect. 5 18
68 265.75 atmosphere 1015.0 30 < th dose independent rect. 5 18
69 265.75 radiation 10.0 30 < th dose dependent rect. 23 6
73 265.76 wind 9.0 30 < th dose dependent rect. 23 6
78 265.99 precipitation 0.1 30 < th dose independent rect. 23 6
79 265.99 precipitation 0.1 30 < th dose dependent rect. 23 6
84 266.20 precipitation 0.1 30 < th dose independent rect. 5 18
85 266.20 precipitation 0.1 30 < th dose dependent rect. 5 18
92 266.42 humidity 80.0 270 > th dose independent rect. 21 5
95 266.47 radiation 1.0 30 < th dose dependent rect. 23 13
100 266.54 radiation 1.0 30 < th dose independent rect. 23 13
115 266.66 radiation 1.0 30 < th dose independent rect. 23 17
116 266.66 wind 9.0 30 < th dose independent rect. 5 18
148 266.90 radiation 40.0 30 < th dose independent rect. 5 6
157 267.10 wind 5.0 270 < th dose independent rect. 21 5
160 267.19 humidity 50.0 270 > th dose independent rect. 2 18
166 267.49 humidity 50.0 10 > th dose independent rect. 5 18
172 267.57 atmosphere 995.0 30 > th dose independent rect. 5 18
174 267.61 wind 1.0 30 > th dose independent rect. 5 18
182 267.69 temperature 30.0 270 < th dose dependent rect. 2 5
196 267.79 wind 9.0 270 < th dose dependent rect. 21 5
200 267.97 wind 5.0 270 < th dose independent rect. 22 3
211 268.30 temperature 15.0 270 > th dose independent rect. 2 19
232 268.75 wind 5.0 30 < th dose independent rect. 5 6
238 268.88 humidity 50.0 43200 > th dose independent rect. 24 4
245 269.00 radiation 40.0 30 < th dose dependent rect. 5 6
246 269.01 temperature 15.0 270 > th dose independent rect. 3 17
257 269.23 humidity 50.0 270 > th dose independent rect. 13 8
258 269.25 precipitation 0.1 270 < th dose independent rect. 21 5
259 269.25 precipitation 0.1 270 < th dose dependent rect. 21 5
261 269.28 temperature 15.0 270 > th dose independent rect. 1 21
280 269.30 wind 9.0 270 < th dose dependent rect. 22 3
282 269.34 atmosphere 1015.0 30 < th dose independent rect. 23 6
291 269.48 radiation 20.0 14400 < th dose independent rect. 24 6
292 269.49 temperature 10.0 270 > th dose independent rect. 21 5
293 269.49 temperature 30.0 270 < th dose independent rect. 21 5
294 269.49 humidity 50.0 270 > th dose independent rect. 21 5
297 269.49 atmosphere 995.0 270 > th dose independent rect. 21 5
298 269.49 radiation 1.0 270 < th dose independent rect. 21 5
305 269.49 radiation 1.0 270 < th dose dependent rect. 21 5
310 269.51 atmosphere 1015.0 270 < th dose independent rect. 2 19
312 269.55 humidity 50.0 270 > th dose dependent rect. 21 5
319 269.68 atmosphere 1015.0 90 < th dose dependent rect. 5 2
321 269.70 wind 7.0 30 < th dose dependent rect. 5 6
328 269.81 temperature 10.0 1440 > th dose independent rect. 24 6
331 269.81 temperature 30.0 1440 < th dose independent rect. 24 6
335 269.81 humidity 50.0 1440 > th dose independent rect. 24 6
344 269.81 atmosphere 995.0 1440 > th dose independent rect. 24 6
345 269.81 radiation 20.0 1440 < th dose independent rect. 24 6
356 269.81 temperature 10.0 1440 > th dose independent rect. 6 18
369 269.92 precipitation 0.1 270 < th dose independent rect. 20 7
370 269.92 precipitation 0.1 270 < th dose dependent rect. 20 7
372 269.93 temperature 10.0 270 > th dose independent rect. 20 7
373 269.93 temperature 30.0 270 < th dose independent rect. 20 7
374 269.93 humidity 50.0 270 > th dose independent rect. 20 7
377 269.93 atmosphere 995.0 270 > th dose independent rect. 20 7
378 269.93 radiation 1.0 270 < th dose independent rect. 20 7
386 269.93 atmosphere 1015.0 270 < th dose independent rect. 3 17
387 269.93 radiation 1.0 270 < th dose dependent rect. 20 7
396 269.98 humidity 50.0 270 > th dose dependent rect. 20 7
398 269.99 wind 5.0 270 < th dose independent rect. 3 4
402 270.00 radiation 10.0 14400 < th dose dependent rect. 24 4
428 270.09 radiation 1.0 30 < th dose independent sin 10 NA
449 270.21 precipitation 0.1 270 < th dose independent rect. 2 19
451 270.21 precipitation 0.1 270 < th dose dependent rect. 2 19
462 270.37 precipitation 0.1 270 < th dose independent rect. 22 3
463 270.37 precipitation 0.1 270 < th dose dependent rect. 22 3
473 270.47 radiation 1.0 30 < th dose dependent sin 9 NA
478 270.50 radiation 40.0 30 < th dose dependent rect. 5 18
480 270.53 humidity 50.0 30 > th dose dependent rect. 5 6
492 270.58 temperature 30.0 90 < th dose dependent rect. 3 7
494 270.60 temperature 15.0 1440 > th dose independent rect. 15 9
497 270.62 humidity 50.0 270 > th dose dependent rect. 22 3
504 270.66 temperature 10.0 270 > th dose independent rect. 22 3
505 270.66 temperature 30.0 270 < th dose independent rect. 22 3
506 270.66 humidity 50.0 270 > th dose independent rect. 22 3
509 270.66 atmosphere 995.0 270 > th dose independent rect. 22 3
510 270.66 radiation 1.0 270 < th dose independent rect. 22 3
516 270.66 radiation 1.0 270 < th dose dependent rect. 22 3
521 270.69 wind 9.0 270 < th dose independent rect. 2 19
522 270.70 atmosphere 1010.0 90 < th dose independent rect. 5 2
523 270.71 precipitation 0.1 270 < th dose independent rect. 3 17
525 270.71 precipitation 0.1 270 < th dose dependent rect. 3 17
575 271.09 temperature 30.0 30 < th dose independent rect. 5 6
589 271.17 wind 9.0 270 < th dose independent rect. 3 17
669 271.44 radiation 40.0 270 < th dose dependent rect. 16 15
689 271.48 humidity 60.0 10 > th dose independent rect. 5 6
696 271.55 radiation 20.0 270 < th dose independent rect. 16 15
702 271.62 precipitation 0.1 270 < th dose independent rect. 3 4
704 271.62 precipitation 0.1 270 < th dose dependent rect. 3 4
708 271.64 wind 9.0 270 < th dose independent rect. 7 10
723 271.76 wind 9.0 270 < th dose independent rect. 7 20
729 271.81 radiation 10.0 90 < th dose dependent rect. 5 2
731 271.82 wind 9.0 30 < th dose dependent rect. 11 18
732 271.83 atmosphere 1015.0 270 < th dose independent rect. 1 21
737 271.87 atmosphere 995.0 270 > th dose independent rect. 7 20
742 271.89 precipitation 0.1 270 < th dose independent rect. 7 20
744 271.89 precipitation 0.1 270 < th dose dependent rect. 7 20
750 271.93 radiation 20.0 270 < th dose independent rect. 2 7
752 271.93 precipitation 0.1 270 < th dose independent rect. 1 21
756 271.93 precipitation 0.1 270 < th dose dependent rect. 1 21
763 271.97 radiation 1.0 4320 < th dose independent rect. 24 5
782 272.00 radiation 1.0 30 > th dose independent sin 10 NA
787 272.02 wind 9.0 270 < th dose dependent rect. 3 4
811 272.06 temperature 30.0 90 < th dose dependent rect. 5 2
829 272.13 wind 9.0 270 < th dose independent rect. 1 21
832 272.14 radiation 30.0 270 < th dose dependent rect. 3 4
837 272.16 wind 1.0 270 > th dose independent rect. 22 3
844 272.21 wind 9.0 30 < th dose independent rect. 11 18
846 272.22 radiation 10.0 90 < th dose independent rect. 5 1
852 272.25 wind 5.0 30 < th dose independent rect. 5 3
859 272.29 radiation 20.0 270 < th dose independent rect. 3 4
862 272.31 humidity 70.0 270 > th dose independent rect. 3 4
876 272.35 wind 9.0 90 < th dose independent rect. 7 22
887 272.41 temperature 10.0 270 > th dose independent rect. 3 4
889 272.41 temperature 30.0 270 < th dose independent rect. 3 4
890 272.41 humidity 50.0 270 > th dose independent rect. 3 4
892 272.41 atmosphere 995.0 270 > th dose independent rect. 3 4
893 272.41 atmosphere 1015.0 270 < th dose independent rect. 3 4
896 272.41 temperature 10.0 270 > th dose independent rect. 7 20
916 272.52 temperature 10.0 270 > th dose independent rect. 7 10
917 272.52 atmosphere 1015.0 270 < th dose independent rect. 7 10
918 272.52 temperature 10.0 270 > th dose independent rect. 17 14
967 272.63 temperature 30.0 30 < th dose dependent rect. 5 6
983 272.71 precipitation 0.1 90 < th dose independent rect. 5 2
986 272.71 precipitation 0.1 90 < th dose dependent rect. 5 2
992 272.76 humidity 70.0 90 > th dose independent rect. 5 2
998 272.78 humidity 50.0 270 > th dose independent rect. 17 14