Os07g0196100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os07g0196100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.02 | 0.41 | 8.92 | -2.4 | 1.76 | -0.596 | -0.0221 | -0.0441 | -0.695 | 7.58 | 20.41 | 342 | -- | -- |
| 75.99 | 0.406 | 8.92 | -2.4 | 1.76 | -0.579 | -0.011 | -- | -0.694 | 7.59 | 20.5 | 349 | -- | -- |
| 76 | 0.406 | 8.92 | -2.38 | 1.76 | -0.583 | -- | -0.00699 | -0.685 | 7.59 | 20.5 | 341 | -- | -- |
| 75.98 | 0.406 | 8.92 | -2.4 | 1.76 | -0.582 | -- | -- | -0.693 | 7.58 | 20.58 | 345 | -- | -- |
| 181.95 | 0.628 | 8.89 | -2.39 | -- | -1.23 | -- | 0.127 | -0.382 | -- | 25.2 | 524 | -- | -- |
| 87.24 | 0.438 | 8.94 | -2.59 | 1.82 | -- | 0.0819 | -- | -0.815 | 7.47 | -- | -- | -- | -- |
| 87.26 | 0.437 | 8.94 | -2.59 | 1.82 | -- | -- | -- | -0.815 | 7.47 | -- | -- | -- | -- |
| 181.05 | 0.627 | 8.88 | -2.2 | -- | -1.24 | -- | -- | -0.305 | -- | 25.3 | 524 | -- | -- |
| 106.05 | 0.48 | 8.77 | -- | 1.81 | -2 | -- | -- | -0.0549 | 7.41 | 18.4 | 47520 | -- | -- |
| 264.09 | 0.759 | 8.99 | -2.56 | -- | -- | -- | -- | -0.786 | -- | -- | -- | -- | -- |
| 263.38 | 0.759 | 8.88 | -- | 1.8 | -- | -- | -- | -0.527 | 7.57 | -- | -- | -- | -- |
| 281.53 | 0.781 | 8.82 | -- | -- | -2 | -- | -- | -0.0364 | -- | 18.26 | 47520 | -- | -- |
| 436.53 | 0.975 | 8.92 | -- | -- | -- | -- | -- | -0.502 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.22 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 5 |
| 2 | 72.47 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 7 |
| 3 | 72.55 | wind | 1 | 14400 | > th | dose independent | rect. | 3 | 3 |
| 4 | 72.59 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 10 |
| 5 | 72.64 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 19 | 73.33 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 23 | 73.52 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 31 | 73.58 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 33 | 73.60 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 83 | 74.73 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 11 |
| 90 | 74.82 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 105 | 74.99 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 106 | 75.00 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 12 |
| 109 | 75.02 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 111 | 75.03 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 7 |
| 113 | 75.05 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 123 | 75.12 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 124 | 75.14 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 11 |
| 152 | 75.37 | temperature | 20 | 270 | > th | dose independent | sin | 11 | NA |
| 158 | 75.40 | wind | 1 | 14400 | > th | dose independent | sin | 10 | NA |
| 170 | 75.44 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 22 |
| 185 | 75.52 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 20 |
| 189 | 75.56 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 192 | 75.58 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 8 |
| 206 | 75.64 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 16 |
| 219 | 75.69 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 227 | 75.73 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 279 | 75.93 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 280 | 75.94 | temperature | 20 | 30 | > th | dose independent | rect. | 22 | 6 |
| 295 | 76.02 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 298 | 76.03 | wind | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 306 | 76.05 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 310 | 76.07 | wind | 9 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 315 | 76.09 | temperature | 20 | 720 | > th | dose independent | sin | 16 | NA |
| 332 | 76.15 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 23 |
| 363 | 76.25 | wind | 1 | 43200 | < th | dose independent | sin | 7 | NA |
| 369 | 76.27 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 13 |
| 397 | 76.35 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 17 |
| 412 | 76.39 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 20 |
| 437 | 76.44 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 467 | 76.51 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 18 |
| 488 | 76.55 | temperature | 20 | 720 | < th | dose independent | rect. | 13 | 14 |
| 512 | 76.59 | temperature | 20 | 720 | < th | dose independent | sin | 16 | NA |
| 598 | 76.75 | wind | 1 | 14400 | > th | dose dependent | rect. | 21 | 9 |
| 651 | 76.81 | wind | 3 | 14400 | < th | dose dependent | sin | 10 | NA |
| 679 | 76.86 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 705 | 76.89 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 20 |
| 793 | 77.01 | wind | 5 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 807 | 77.03 | wind | 1 | 4320 | < th | dose dependent | rect. | 19 | 2 |
| 875 | 77.11 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 19 |
| 893 | 77.14 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 908 | 77.15 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 6 |
| 911 | 77.16 | temperature | 20 | 10 | > th | dose independent | sin | 10 | NA |
| 924 | 77.17 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 20 |
| 925 | 77.17 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 23 |
| 926 | 77.17 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 23 |
| 952 | 77.20 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 953 | 77.20 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 1 |
| 970 | 77.21 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |