Os07g0195100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ras-related protein ARA-3.
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Os07g0195100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ras-related protein ARA-3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.56 | 0.228 | 11.8 | 0.138 | 0.373 | -0.541 | 0.213 | -1.16 | 0.361 | 9.21 | 16.55 | 187 | -- | -- |
| 25.69 | 0.236 | 11.8 | 0.164 | 0.343 | -0.476 | 0.022 | -- | 0.378 | 8.94 | 15.2 | 209 | -- | -- |
| 23.68 | 0.227 | 11.8 | 0.146 | 0.377 | -0.539 | -- | -1.07 | 0.36 | 9.15 | 16.94 | 175 | -- | -- |
| 25.5 | 0.235 | 11.8 | 0.154 | 0.326 | -0.501 | -- | -- | 0.375 | 9.59 | 11.34 | 269 | -- | -- |
| 28.99 | 0.251 | 11.8 | 0.13 | -- | -0.47 | -- | -0.891 | 0.368 | -- | 19.1 | 375 | -- | -- |
| 29.37 | 0.254 | 11.8 | 0.125 | 0.362 | -- | 0.23 | -- | 0.332 | 6.59 | -- | -- | -- | -- |
| 29.49 | 0.254 | 11.8 | 0.129 | 0.363 | -- | -- | -- | 0.331 | 6.72 | -- | -- | -- | -- |
| 29.02 | 0.251 | 11.8 | 0.163 | -- | -0.449 | -- | -- | 0.384 | -- | -1.077 | 792 | -- | -- |
| 26.06 | 0.238 | 11.8 | -- | 0.322 | -0.5 | -- | -- | 0.354 | 9.46 | 13.54 | 269 | -- | -- |
| 36.38 | 0.282 | 11.8 | 0.137 | -- | -- | -- | -- | 0.338 | -- | -- | -- | -- | -- |
| 29.93 | 0.256 | 11.8 | -- | 0.365 | -- | -- | -- | 0.317 | 6.7 | -- | -- | -- | -- |
| 29.72 | 0.254 | 11.8 | -- | -- | -0.442 | -- | -- | 0.365 | -- | -0.1368 | 788 | -- | -- |
| 36.87 | 0.283 | 11.8 | -- | -- | -- | -- | -- | 0.323 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.54 | radiation | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 3 | 23.55 | radiation | 20 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 57 | 23.69 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 10 |
| 74 | 23.71 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 260 | 24.07 | radiation | 20 | 270 | > th | dose dependent | no | NA | NA |
| 386 | 24.11 | radiation | 20 | 270 | > th | dose independent | rect. | 7 | 8 |
| 578 | 24.23 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 725 | 24.28 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 728 | 24.28 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 729 | 24.29 | radiation | 20 | 270 | > th | dose independent | sin | 3 | NA |
| 730 | 24.29 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 756 | 24.32 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 6 | 16 |
| 763 | 24.33 | radiation | 20 | 270 | < th | dose independent | sin | 4 | NA |
| 768 | 24.34 | radiation | 40 | 270 | < th | dose independent | sin | 5 | NA |
| 770 | 24.34 | radiation | 40 | 270 | < th | dose dependent | sin | 3 | NA |
| 859 | 24.40 | radiation | 40 | 270 | > th | dose independent | sin | 5 | NA |
| 992 | 24.45 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 5 | 16 |
| 1000 | 24.45 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |