Os07g0194800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0194800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.23 | 0.484 | 8.38 | 1.41 | 1.09 | -0.944 | 0.44 | 0.131 | 0.557 | 5.2 | 7.401 | 27 | -- | -- |
| 106.3 | 0.48 | 8.38 | 1.41 | 1.12 | -0.974 | 0.642 | -- | 0.545 | 5.05 | 7.079 | 38 | -- | -- |
| 106.62 | 0.481 | 8.38 | 1.41 | 1.08 | -0.937 | -- | 0.182 | 0.56 | 5.22 | 7.009 | 23 | -- | -- |
| 106.77 | 0.481 | 8.37 | 1.4 | 1.06 | -0.924 | -- | -- | 0.565 | 5.28 | 7.052 | 19 | -- | -- |
| 159.62 | 0.592 | 8.38 | 1.43 | -- | -0.838 | -- | 0.219 | 0.618 | -- | 6.104 | 15 | -- | -- |
| 122.1 | 0.518 | 8.34 | 1.41 | 1.39 | -- | 0.0781 | -- | 0.629 | 8.53 | -- | -- | -- | -- |
| 122.12 | 0.518 | 8.34 | 1.41 | 1.39 | -- | -- | -- | 0.629 | 8.53 | -- | -- | -- | -- |
| 159.91 | 0.592 | 8.38 | 1.43 | -- | -0.837 | -- | -- | 0.619 | -- | 6.104 | 15 | -- | -- |
| 158.87 | 0.587 | 8.41 | -- | 1.1 | -0.918 | -- | -- | 0.477 | 5.16 | 4.988 | 27 | -- | -- |
| 231.05 | 0.71 | 8.38 | 1.42 | -- | -- | -- | -- | 0.642 | -- | -- | -- | -- | -- |
| 174.5 | 0.618 | 8.38 | -- | 1.4 | -- | -- | -- | 0.472 | 8.45 | -- | -- | -- | -- |
| 213.47 | 0.683 | 8.42 | -- | -- | -0.821 | -- | -- | 0.448 | -- | 4.988 | 27 | -- | -- |
| 283.89 | 0.786 | 8.41 | -- | -- | -- | -- | -- | 0.485 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.02 | radiation | 1 | 43200 | < th | dose independent | sin | 15 | NA |
| 2 | 103.02 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 23 | 103.05 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 27 | 103.06 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 58 | 103.12 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 59 | 103.12 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 61 | 103.13 | radiation | 1 | 43200 | > th | dose independent | sin | 15 | NA |
| 62 | 103.13 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 86 | 103.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 110 | 103.17 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 118 | 103.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 123 | 103.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 17 |
| 124 | 103.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 205 | 103.23 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 17 |
| 249 | 103.27 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 285 | 103.29 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 13 |
| 323 | 103.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 14 |
| 324 | 103.33 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 325 | 103.33 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 15 |
| 424 | 103.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 456 | 103.38 | radiation | 1 | 43200 | < th | dose dependent | sin | 13 | NA |
| 471 | 103.40 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 14 |
| 489 | 103.41 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |
| 626 | 103.51 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 676 | 103.58 | radiation | 40 | 1440 | > th | dose independent | rect. | 15 | 18 |
| 771 | 103.72 | radiation | 40 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 831 | 103.80 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 857 | 103.81 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 861 | 103.81 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 885 | 103.82 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 920 | 103.84 | radiation | 1 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 948 | 103.86 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 995 | 103.88 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 997 | 103.89 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 1 |