Os07g0194400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0194400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 246.73 | 0.738 | 6.33 | -3.05 | 0.706 | 2.57 | -0.0141 | -5.42 | -0.7 | 4.66 | 25.34 | 1265 | -- | -- |
| 258.42 | 0.749 | 6.2 | -1.73 | 0.693 | 2.13 | -0.0728 | -- | -0.548 | 4.99 | 24.28 | 1234 | -- | -- |
| 246.54 | 0.731 | 6.32 | -3.04 | 0.714 | 2.57 | -- | -5.45 | -0.67 | 4.78 | 25.49 | 1240 | -- | -- |
| 256.33 | 0.746 | 6.15 | -1.63 | 0.7 | 2.05 | -- | -- | -0.344 | 4.61 | 25.39 | 1252 | -- | -- |
| 272.23 | 0.768 | 6.34 | -2.87 | -- | 2.64 | -- | -4.65 | -0.707 | -- | 25.05 | 1243 | -- | -- |
| 408.75 | 0.948 | 6.12 | -1.02 | 0.974 | -- | 0.0722 | -- | -0.159 | 3.6 | -- | -- | -- | -- |
| 408.77 | 0.947 | 6.12 | -1.02 | 0.974 | -- | -- | -- | -0.16 | 3.59 | -- | -- | -- | -- |
| 281.45 | 0.781 | 6.18 | -1.69 | -- | 2.2 | -- | -- | -0.406 | -- | 24.87 | 1246 | -- | -- |
| 318.48 | 0.831 | 6.04 | -- | 0.712 | 1.6 | -- | -- | 0.15 | 4.32 | 28.39 | 1221 | -- | -- |
| 461.58 | 1 | 6.12 | -0.983 | -- | -- | -- | -- | -0.134 | -- | -- | -- | -- | -- |
| 436.4 | 0.977 | 6.09 | -- | 0.954 | -- | -- | -- | -0.0456 | 3.6 | -- | -- | -- | -- |
| 348.03 | 0.869 | 6.05 | -- | -- | 1.68 | -- | -- | 0.165 | -- | 28.29 | 1234 | -- | -- |
| 487.07 | 1.03 | 6.09 | -- | -- | -- | -- | -- | -0.0246 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 251.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 2 | 251.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 5 | 252.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 18 | 252.50 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 79 | 254.00 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 147 | 256.31 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 149 | 256.32 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 20 |
| 176 | 256.55 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 180 | 256.57 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 214 | 257.08 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 241 | 257.66 | wind | 9 | 43200 | > th | dose dependent | sin | 15 | NA |
| 247 | 257.91 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 302 | 259.63 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 17 |
| 316 | 260.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 321 | 260.26 | wind | 9 | 43200 | > th | dose independent | sin | 14 | NA |
| 356 | 261.16 | wind | 9 | 43200 | < th | dose independent | sin | 14 | NA |
| 374 | 261.53 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 20 |
| 376 | 261.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 407 | 262.16 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 448 | 262.78 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 456 | 262.90 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 21 |
| 466 | 263.02 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 533 | 263.71 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 17 |
| 538 | 263.74 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 545 | 263.79 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 22 |
| 549 | 263.82 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 550 | 263.85 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 553 | 263.88 | wind | 5 | 43200 | > th | dose dependent | rect. | 2 | 20 |
| 571 | 264.00 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 22 |
| 579 | 264.05 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 20 |
| 580 | 264.06 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 17 |
| 581 | 264.06 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 584 | 264.07 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 590 | 264.13 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 600 | 264.20 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 22 |
| 605 | 264.22 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 606 | 264.22 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 13 |
| 611 | 264.24 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 15 |
| 621 | 264.30 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 633 | 264.37 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 634 | 264.37 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 642 | 264.40 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 20 |
| 643 | 264.40 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 21 |
| 645 | 264.43 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 655 | 264.48 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 658 | 264.50 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 22 |
| 671 | 264.54 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 19 |
| 687 | 264.62 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 696 | 264.64 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 709 | 264.70 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 21 |
| 713 | 264.71 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 716 | 264.72 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 723 | 264.76 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 728 | 264.77 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 21 |
| 733 | 264.78 | temperature | 10 | 1440 | > th | dose dependent | sin | 21 | NA |
| 735 | 264.79 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 763 | 264.91 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 784 | 264.98 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 16 |
| 798 | 265.02 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 19 |
| 830 | 265.13 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 19 |
| 834 | 265.15 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 836 | 265.16 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 847 | 265.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 873 | 265.31 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 912 | 265.47 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 939 | 265.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 947 | 265.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 957 | 265.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 966 | 265.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 974 | 265.73 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 988 | 265.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 996 | 265.85 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 4 |