FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0194100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to OSK2 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.74 (0.0345) R2 : 0.526
β1 : 2.75 (0.14) R2dD : 0.548 R2D : 0.335
β2 : 0.877 (0.0854) R2dC : 0.112 R2C : 0.101
β3 : 0.899 (0.129) R2dE : 0.0776 R2E : -0.145
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.419 (0.0806) R2dN8 : 0.048 R2N8 : -0.0505
σ : 0.625
deviance : 180.2
__
_____
C
peak time of C : 4.06
E
wheather : temperature
threshold : 21.1
memory length : 2775
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
165.24 0.604 3.82 2.54 0.833 1.54 1.81 2.47 0.342 3.98 19.6 3294 -- --
171.47 0.61 3.73 2.81 0.886 0.915 1.82 -- 0.43 3.76 21.1 2810 -- --
174.58 0.615 3.82 2.51 0.846 1.56 -- 2.5 0.334 4.11 19.62 3247 -- --
180.2 0.625 3.74 2.75 0.877 0.899 -- -- 0.419 4.06 21.1 2775 -- --
213.57 0.681 3.83 2.54 -- 1.55 -- 2.53 0.35 -- 19.63 3247 -- --
190.13 0.646 3.79 2.3 0.83 -- 1.87 -- 0.169 4.09 -- -- -- --
200.08 0.662 3.79 2.28 0.844 -- -- -- 0.159 4.18 -- -- -- --
219.75 0.69 3.73 2.7 -- 0.767 -- -- 0.466 -- 22 3258 -- --
336.66 0.859 3.85 -- 0.898 -0.0544 -- -- -0.105 4.09 21.1 2775 -- --
238.62 0.722 3.8 2.31 -- -- -- -- 0.181 -- -- -- -- --
336.81 0.858 3.85 -- 0.887 -- -- -- -0.0947 4.14 -- -- -- --
291.4 0.795 3.94 -- -- -1.48 -- -- -0.435 -- 18.5 47520 -- --
379.56 0.909 3.86 -- -- -- -- -- -0.0751 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 153.80 wind 3 14400 < th dose dependent rect. 12 1
2 154.34 wind 3 14400 < th dose dependent rect. 3 11
5 154.89 wind 3 14400 < th dose independent rect. 3 11
11 155.19 wind 3 14400 < th dose independent rect. 1 14
14 155.35 wind 3 14400 < th dose dependent rect. 1 14
19 155.49 wind 3 14400 > th dose independent rect. 3 11
23 155.59 wind 3 14400 < th dose independent rect. 24 16
25 155.61 wind 3 14400 > th dose independent rect. 1 14
29 155.67 wind 3 14400 < th dose dependent sin 3 NA
36 155.80 radiation 40 43200 > th dose independent rect. 13 1
53 156.09 wind 3 14400 < th dose independent sin 4 NA
55 156.11 radiation 40 43200 < th dose independent rect. 12 1
63 156.22 wind 3 14400 < th dose dependent rect. 5 5
68 156.37 radiation 40 43200 > th dose dependent rect. 12 2
75 156.44 wind 1 43200 < th dose dependent rect. 10 3
114 156.63 wind 3 14400 > th dose independent sin 4 NA
143 156.88 radiation 20 43200 < th dose independent rect. 15 1
165 156.92 wind 3 14400 < th dose independent rect. 4 3
178 156.92 radiation 40 43200 < th dose independent rect. 12 17
187 156.96 radiation 40 43200 < th dose dependent rect. 12 1
191 156.99 radiation 20 43200 > th dose independent rect. 12 2
195 157.01 atmosphere 1010 14400 < th dose independent rect. 16 2
199 157.04 atmosphere 1015 43200 < th dose independent rect. 13 1
210 157.09 humidity 50 43200 > th dose independent rect. 13 1
228 157.10 atmosphere 1015 43200 > th dose independent rect. 12 1
230 157.10 radiation 20 43200 < th dose independent rect. 15 7
233 157.11 radiation 20 43200 < th dose independent rect. 15 4
239 157.11 radiation 20 43200 < th dose independent rect. 15 14
269 157.16 atmosphere 1010 14400 > th dose dependent rect. 2 1
295 157.24 atmosphere 1010 14400 > th dose dependent rect. 24 1
299 157.25 atmosphere 1010 14400 > th dose dependent rect. 24 3
315 157.31 atmosphere 1010 14400 > th dose independent rect. 17 1
323 157.34 radiation 40 43200 > th dose independent sin 15 NA
324 157.34 wind 3 14400 < th dose independent rect. 5 1
331 157.35 radiation 10 43200 > th dose dependent rect. 15 16
347 157.36 wind 3 14400 < th dose dependent rect. 18 20
364 157.37 wind 3 14400 < th dose dependent rect. 20 19
375 157.41 wind 3 14400 > th dose independent rect. 5 2
381 157.45 radiation 10 43200 > th dose dependent rect. 16 2
397 157.46 humidity 50 43200 < th dose independent rect. 13 1
427 157.49 radiation 1 43200 > th dose dependent rect. 11 7
461 157.52 radiation 40 43200 < th dose independent sin 15 NA
481 157.53 wind 1 43200 < th dose independent rect. 2 1
588 157.62 wind 9 14400 < th dose dependent rect. 4 10
593 157.63 radiation 40 43200 < th dose dependent rect. 12 5
595 157.63 radiation 40 43200 < th dose dependent rect. 11 7
623 157.65 wind 1 43200 < th dose independent rect. 11 2
624 157.65 radiation 20 43200 > th dose independent rect. 12 4
687 157.71 atmosphere 1010 14400 < th dose independent rect. 13 5
688 157.71 radiation 30 43200 > th dose dependent sin 15 NA
692 157.72 humidity 80 43200 < th dose independent rect. 17 14
705 157.73 humidity 80 43200 > th dose independent rect. 17 14
706 157.73 radiation 1 43200 > th dose dependent sin 17 NA
707 157.73 radiation 30 43200 < th dose dependent rect. 15 2
728 157.77 radiation 30 43200 < th dose dependent rect. 15 16
747 157.80 wind 1 43200 > th dose independent rect. 11 2
776 157.82 radiation 40 43200 < th dose dependent sin 17 NA
974 157.95 radiation 10 43200 > th dose independent rect. 16 15