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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0193800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MYC1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0148) R2 : 0.00251
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0334 (0.0311) R2dN8 : 0.00324 R2N8 : 0.00251
σ : 0.279
deviance : 35.62
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.92 0.274 2.98 -0.00235 0.0769 -0.19 0.00229 0.772 0.0308 9.11 1.143 16 -- --
34.45 0.273 2.97 0.0253 0.0791 -0.125 0.0316 -- 0.0421 9.19 1.332 17 -- --
33.92 0.271 2.98 -0.0023 0.0769 -0.19 -- 0.772 0.0307 9.1 1.142 16 -- --
34.44 0.273 2.97 0.0257 0.0786 -0.128 -- -- 0.0429 9.21 1.326 19 -- --
34.25 0.273 2.99 -0.00516 -- -0.202 -- 0.799 0.031 -- 1.101 16 -- --
34.93 0.277 2.97 0.0529 0.107 -- -0.0636 -- 0.0373 7.19 -- -- -- --
34.94 0.277 2.97 0.0518 0.107 -- -- -- 0.0375 7.35 -- -- -- --
34.8 0.275 2.98 0.0231 -- -0.138 -- -- 0.0436 -- 1.304 19 -- --
34.46 0.273 2.97 -- 0.0779 -0.131 -- -- 0.0401 9.24 1.3 19 -- --
35.55 0.279 2.98 0.0535 -- -- -- -- 0.0393 -- -- -- -- --
35.01 0.277 2.97 -- 0.108 -- -- -- 0.0318 7.32 -- -- -- --
34.81 0.275 2.98 -- -- -0.141 -- -- 0.0412 -- 1.359 19 -- --
35.62 0.279 2.98 -- -- -- -- -- 0.0334 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.93 temperature 20.0 30 > th dose dependent rect. 2 1
2 31.93 radiation 1.0 43200 < th dose dependent rect. 3 1
3 31.94 temperature 20.0 30 > th dose independent rect. 2 1
5 31.97 atmosphere 1000.0 30 > th dose independent rect. 2 1
8 31.97 atmosphere 995.0 30 > th dose dependent rect. 2 1
11 31.98 wind 3.0 30 < th dose independent rect. 2 1
13 31.99 wind 5.0 30 < th dose dependent rect. 2 1
19 32.00 temperature 10.0 30 > th dose independent rect. 2 1
21 32.00 temperature 30.0 30 < th dose independent rect. 2 1
22 32.00 humidity 50.0 30 > th dose independent rect. 2 1
26 32.00 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 32.00 radiation 1.0 30 < th dose independent rect. 2 1
33 32.00 precipitation 0.1 30 < th dose independent rect. 2 1
34 32.00 temperature 10.0 30 > th dose independent rect. 3 23
36 32.00 humidity 50.0 30 > th dose dependent rect. 2 1
38 32.00 radiation 1.0 30 < th dose dependent rect. 2 1
43 32.00 precipitation 0.1 30 < th dose dependent rect. 2 1
59 32.06 wind 9.0 1440 < th dose independent rect. 3 1
60 32.06 temperature 10.0 1440 > th dose independent rect. 3 1
63 32.06 temperature 30.0 1440 < th dose independent rect. 3 1
67 32.06 humidity 50.0 1440 > th dose independent rect. 3 1
76 32.06 atmosphere 995.0 1440 > th dose independent rect. 3 1
77 32.06 radiation 1.0 1440 < th dose independent rect. 3 1
97 32.06 temperature 10.0 1440 > th dose independent rect. 4 23
109 32.07 atmosphere 1015.0 30 < th dose dependent rect. 2 1
110 32.09 wind 1.0 30 > th dose independent rect. 2 1
112 32.11 temperature 30.0 30 < th dose dependent rect. 2 1
135 32.28 atmosphere 995.0 30 > th dose independent rect. 3 23
169 32.39 precipitation 0.1 30 < th dose independent rect. 3 23
170 32.39 precipitation 0.1 30 < th dose dependent rect. 3 23
182 32.65 wind 9.0 30 < th dose independent rect. 3 23
184 32.66 temperature 30.0 30 < th dose independent rect. 3 23
200 32.95 humidity 50.0 30 > th dose independent rect. 3 23
247 33.32 radiation 10.0 10 > th dose independent rect. 6 1
274 33.32 radiation 10.0 10 > th dose dependent rect. 6 1
303 33.38 humidity 90.0 90 < th dose independent rect. 2 1
342 33.62 wind 3.0 30 < th dose dependent rect. 2 10
381 33.77 wind 1.0 10 > th dose independent rect. 11 23
382 33.77 atmosphere 1015.0 30 < th dose independent rect. 3 23
398 33.81 wind 1.0 30 < th dose independent rect. 10 1
399 33.81 temperature 10.0 1440 > th dose independent rect. 11 1
403 33.81 atmosphere 995.0 1440 > th dose independent rect. 11 1
406 33.81 precipitation 0.1 1440 < th dose independent rect. 11 1
409 33.81 temperature 10.0 1440 > th dose independent rect. 12 23
412 33.81 wind 1.0 30 < th dose dependent rect. 10 1
413 33.81 precipitation 0.1 1440 < th dose dependent rect. 11 1
443 33.82 wind 3.0 30 < th dose dependent rect. 2 6
445 33.82 wind 3.0 30 < th dose dependent rect. 2 21
446 33.83 wind 1.0 10 < th dose independent rect. 15 12
448 33.84 wind 1.0 10 < th dose independent rect. 21 6
454 33.84 wind 1.0 10 < th dose independent rect. 11 16
462 33.85 wind 1.0 10 < th dose independent rect. 6 21
464 33.85 wind 1.0 30 > th dose independent rect. 3 23
468 33.86 wind 3.0 4320 < th dose independent rect. 3 4
473 33.87 humidity 90.0 90 < th dose independent rect. 1 3
477 33.87 temperature 10.0 720 > th dose dependent rect. 2 1
478 33.87 temperature 25.0 30 > th dose dependent rect. 10 1
489 33.89 humidity 70.0 30 < th dose independent rect. 10 1
496 33.90 atmosphere 1010.0 30 < th dose independent rect. 10 1
511 33.91 radiation 40.0 30 < th dose independent rect. 10 1
527 33.91 wind 3.0 4320 > th dose independent rect. 3 4
536 33.92 wind 3.0 4320 > th dose independent rect. 5 2
541 33.92 wind 1.0 10 > th dose independent rect. 23 23
545 33.92 wind 9.0 30 < th dose dependent rect. 2 12
547 33.93 temperature 25.0 30 > th dose independent rect. 10 1
560 33.94 wind 1.0 10 < th dose independent rect. 2 5
569 33.95 wind 3.0 4320 < th dose independent rect. 3 1
570 33.95 radiation 20.0 30 > th dose independent rect. 10 1
576 33.95 humidity 70.0 30 < th dose dependent rect. 10 1
589 33.97 atmosphere 1005.0 30 > th dose independent rect. 10 1
594 33.97 wind 1.0 10 > th dose independent rect. 23 11
596 33.97 atmosphere 1000.0 10 > th dose independent rect. 14 12
598 33.97 radiation 10.0 30 < th dose independent rect. 3 23
611 33.98 atmosphere 1000.0 30 > th dose dependent rect. 10 1
624 33.99 wind 5.0 30 < th dose dependent rect. 10 1
629 33.99 radiation 40.0 30 < th dose dependent rect. 10 1
637 34.00 temperature 30.0 30 < th dose independent rect. 10 1
677 34.01 temperature 10.0 30 > th dose independent rect. 10 1
679 34.01 humidity 50.0 30 > th dose independent rect. 10 1
681 34.01 humidity 90.0 30 < th dose independent rect. 10 1
685 34.01 precipitation 0.1 30 < th dose independent rect. 10 1
691 34.01 temperature 10.0 30 > th dose independent rect. 11 23
693 34.01 precipitation 0.1 30 < th dose dependent rect. 10 1
702 34.02 wind 1.0 30 > th dose independent rect. 10 1
705 34.02 atmosphere 1000.0 10 > th dose independent rect. 2 12
706 34.02 radiation 40.0 30 < th dose independent rect. 14 12
715 34.03 humidity 60.0 10 > th dose independent rect. 14 12
738 34.05 wind 1.0 10 > th dose independent sin 14 NA
741 34.05 wind 9.0 10 < th dose independent rect. 2 12
758 34.06 radiation 1.0 30 > th dose dependent rect. 10 1
759 34.06 wind 1.0 4320 > th dose dependent rect. 5 2
765 34.07 wind 9.0 10 < th dose independent rect. 14 12
766 34.07 precipitation 0.1 720 < th dose independent rect. 15 16
770 34.07 temperature 30.0 14400 > th dose dependent rect. 8 1
791 34.07 precipitation 0.1 720 < th dose dependent rect. 15 16
795 34.08 temperature 10.0 10 > th dose independent rect. 2 12
797 34.08 temperature 10.0 10 > th dose independent rect. 14 12
800 34.08 atmosphere 1015.0 10 < th dose independent rect. 2 12
801 34.08 precipitation 0.1 10 < th dose independent rect. 2 12
803 34.08 wind 5.0 4320 < th dose dependent rect. 3 4
807 34.08 precipitation 0.1 10 < th dose dependent rect. 2 12
843 34.09 precipitation 0.1 720 < th dose independent rect. 19 8
844 34.09 humidity 50.0 10 > th dose independent rect. 2 12
852 34.09 atmosphere 995.0 720 > th dose independent rect. 3 23
853 34.09 wind 3.0 30 < th dose dependent rect. 6 1
854 34.09 wind 1.0 14400 < th dose dependent rect. 6 1
855 34.09 humidity 50.0 30 > th dose dependent rect. 10 1
856 34.09 humidity 90.0 4320 < th dose dependent rect. 3 1
860 34.09 precipitation 0.1 720 < th dose dependent rect. 19 8
865 34.10 atmosphere 995.0 720 > th dose independent rect. 14 1
869 34.10 radiation 40.0 10 < th dose independent rect. 2 12
870 34.10 precipitation 0.1 10 < th dose independent rect. 14 12
871 34.10 humidity 70.0 4320 > th dose dependent rect. 3 1
872 34.10 atmosphere 1005.0 30 > th dose dependent rect. 6 1
873 34.10 atmosphere 1015.0 30 < th dose dependent rect. 10 1
875 34.10 wind 5.0 4320 < th dose dependent rect. 5 2
876 34.10 wind 9.0 4320 < th dose dependent rect. 5 2
879 34.10 precipitation 0.1 10 < th dose dependent rect. 14 12
883 34.11 temperature 30.0 14400 > th dose independent rect. 8 1
911 34.11 atmosphere 995.0 720 > th dose independent rect. 21 18
922 34.12 precipitation 0.1 720 < th dose independent rect. 14 1
926 34.12 atmosphere 995.0 720 > th dose independent rect. 7 8
937 34.12 wind 1.0 10 > th dose independent rect. 21 23
938 34.12 atmosphere 995.0 720 > th dose independent rect. 15 23
945 34.12 precipitation 0.1 720 < th dose dependent rect. 14 1
948 34.12 wind 1.0 4320 > th dose dependent rect. 3 4
952 34.13 wind 1.0 720 > th dose independent rect. 14 1
953 34.13 precipitation 0.1 720 < th dose independent rect. 2 1
955 34.13 temperature 30.0 14400 < th dose independent rect. 6 3
958 34.13 precipitation 0.1 720 < th dose independent rect. 15 6
962 34.13 wind 1.0 30 > th dose dependent rect. 10 1
966 34.13 precipitation 0.1 720 < th dose dependent rect. 2 1
970 34.13 precipitation 0.1 720 < th dose dependent rect. 15 6
977 34.13 wind 3.0 10 < th dose dependent rect. 10 17
981 34.14 temperature 10.0 720 > th dose independent rect. 14 1
983 34.14 temperature 30.0 14400 < th dose independent rect. 8 1
988 34.14 atmosphere 1015.0 720 < th dose independent rect. 14 1