Os07g0193200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ankyrin repeat containing protein.
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Os07g0193200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ankyrin repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 208.52 | 0.678 | 3.26 | 0.376 | 0.405 | -1.07 | -0.504 | 2.5 | 0.086 | 11.4 | 24 | 20 | -- | -- |
| 211.26 | 0.677 | 3.3 | 0.0229 | 0.392 | -0.833 | -0.13 | -- | -0.0299 | 11 | 24.1 | 19 | -- | -- |
| 209.29 | 0.674 | 3.27 | 0.27 | 0.399 | -0.987 | -- | 1.93 | 0.0482 | 10.8 | 24.1 | 19 | -- | -- |
| 211.26 | 0.677 | 3.31 | 0.0112 | 0.375 | -0.815 | -- | -- | -0.0297 | 10.6 | 24.1 | 22 | -- | -- |
| 217.32 | 0.687 | 3.3 | 0.144 | -- | -0.751 | -- | 1.38 | -0.0149 | -- | 24.1 | 60 | -- | -- |
| 220.78 | 0.697 | 3.33 | -0.135 | 0.382 | -- | 0.541 | -- | -0.127 | 6.75 | -- | -- | -- | -- |
| 221.41 | 0.697 | 3.33 | -0.124 | 0.385 | -- | -- | -- | -0.128 | 7.19 | -- | -- | -- | -- |
| 216.52 | 0.685 | 3.32 | -0.0155 | -- | -0.684 | -- | -- | -0.0548 | -- | 24.3 | 228 | -- | -- |
| 211.26 | 0.677 | 3.31 | -- | 0.374 | -0.813 | -- | -- | -0.0297 | 10.6 | 24.1 | 22 | -- | -- |
| 229.24 | 0.707 | 3.34 | -0.117 | -- | -- | -- | -- | -0.121 | -- | -- | -- | -- | -- |
| 221.82 | 0.697 | 3.32 | -- | 0.384 | -- | -- | -- | -0.114 | 7.21 | -- | -- | -- | -- |
| 216.52 | 0.685 | 3.32 | -- | -- | -0.678 | -- | -- | -0.0547 | -- | 24.3 | 228 | -- | -- |
| 229.6 | 0.707 | 3.33 | -- | -- | -- | -- | -- | -0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 202.17 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 7 | 204.64 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 9 |
| 8 | 204.84 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 9 | 204.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 10 | 205.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 12 |
| 11 | 205.07 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 11 |
| 13 | 205.20 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 12 |
| 16 | 205.32 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 21 |
| 19 | 205.39 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 3 |
| 36 | 205.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 39 | 205.95 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 1 |
| 55 | 206.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 9 |
| 57 | 206.27 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 16 |
| 59 | 206.31 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 5 |
| 64 | 206.37 | humidity | 60 | 90 | > th | dose dependent | rect. | 10 | 2 |
| 72 | 206.59 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 84 | 206.73 | temperature | 25 | 90 | < th | dose independent | sin | 4 | NA |
| 91 | 206.83 | humidity | 70 | 90 | > th | dose independent | rect. | 10 | 1 |
| 93 | 206.87 | temperature | 30 | 30 | < th | dose independent | rect. | 11 | 12 |
| 110 | 207.08 | temperature | 30 | 30 | < th | dose independent | rect. | 11 | 1 |
| 112 | 207.14 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 7 |
| 121 | 207.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 12 |
| 137 | 207.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 11 |
| 138 | 207.45 | temperature | 30 | 30 | < th | dose dependent | rect. | 24 | 13 |
| 144 | 207.48 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 18 |
| 151 | 207.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 164 | 207.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 6 |
| 166 | 207.67 | temperature | 15 | 720 | > th | dose independent | rect. | 3 | 9 |
| 170 | 207.71 | temperature | 30 | 30 | < th | dose independent | rect. | 11 | 19 |
| 182 | 207.79 | temperature | 15 | 720 | > th | dose independent | rect. | 24 | 15 |
| 187 | 207.81 | temperature | 25 | 90 | < th | dose independent | rect. | 7 | 5 |
| 209 | 207.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 216 | 208.00 | radiation | 1 | 90 | < th | dose independent | rect. | 10 | 1 |
| 218 | 208.00 | radiation | 1 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 220 | 208.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 222 | 208.02 | humidity | 80 | 270 | > th | dose independent | rect. | 8 | 4 |
| 226 | 208.03 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 232 | 208.07 | atmosphere | 995 | 720 | > th | dose independent | rect. | 24 | 15 |
| 233 | 208.07 | temperature | 30 | 30 | < th | dose dependent | sin | 3 | NA |
| 266 | 208.24 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 11 | 19 |
| 290 | 208.32 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 24 | 15 |
| 303 | 208.35 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 306 | 208.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 316 | 208.43 | wind | 1 | 90 | > th | dose independent | rect. | 12 | 23 |
| 331 | 208.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 1 |
| 337 | 208.55 | temperature | 15 | 90 | > th | dose dependent | sin | 0 | NA |
| 338 | 208.55 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 12 |
| 375 | 208.69 | humidity | 80 | 270 | > th | dose independent | rect. | 8 | 1 |
| 388 | 208.72 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 400 | 208.76 | humidity | 70 | 90 | > th | dose independent | rect. | 10 | 19 |
| 402 | 208.77 | temperature | 10 | 720 | > th | dose independent | rect. | 15 | 9 |
| 412 | 208.79 | humidity | 60 | 90 | > th | dose dependent | rect. | 10 | 11 |
| 421 | 208.82 | atmosphere | 995 | 720 | > th | dose independent | rect. | 3 | 9 |
| 423 | 208.82 | temperature | 10 | 720 | > th | dose independent | rect. | 12 | 15 |
| 479 | 208.96 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 509 | 209.04 | temperature | 20 | 30 | > th | dose dependent | rect. | 8 | 12 |
| 580 | 209.20 | temperature | 30 | 30 | < th | dose dependent | sin | 23 | NA |
| 597 | 209.23 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 611 | 209.26 | temperature | 30 | 30 | < th | dose independent | rect. | 7 | 23 |
| 659 | 209.33 | radiation | 40 | 720 | < th | dose independent | rect. | 15 | 9 |
| 681 | 209.36 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 16 |
| 690 | 209.38 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 12 |
| 726 | 209.46 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 22 |
| 756 | 209.56 | temperature | 15 | 720 | > th | dose independent | rect. | 21 | 20 |
| 783 | 209.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 797 | 209.66 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 16 |
| 856 | 209.74 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 877 | 209.78 | humidity | 60 | 10 | > th | dose dependent | rect. | 10 | 20 |
| 889 | 209.82 | wind | 1 | 90 | > th | dose independent | rect. | 23 | 11 |
| 896 | 209.83 | temperature | 30 | 90 | < th | dose independent | rect. | 14 | 23 |
| 922 | 209.88 | temperature | 25 | 30 | > th | dose independent | rect. | 6 | 14 |
| 930 | 209.89 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 18 | 12 |
| 938 | 209.90 | humidity | 50 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 942 | 209.91 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 7 |
| 944 | 209.92 | temperature | 15 | 720 | > th | dose independent | rect. | 5 | 4 |
| 945 | 209.92 | temperature | 15 | 720 | > th | dose independent | rect. | 5 | 12 |
| 952 | 209.93 | temperature | 15 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 975 | 209.98 | temperature | 30 | 90 | < th | dose independent | rect. | 9 | 23 |
| 987 | 209.99 | humidity | 60 | 90 | > th | dose dependent | rect. | 10 | 19 |
| 996 | 210.02 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 20 | 10 |