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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0193000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Soluble quinoprotein glucose dehydrogenase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.79 (0.0358) R2 : 0.00407
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.103 (0.0753) R2dN8 : 0.00526 R2N8 : 0.00407
σ : 0.674
deviance : 208.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
199.37 0.663 2.76 0.00874 0.0473 -0.686 0.738 -0.591 0.0449 17.8 10.27 4464 -- --
199.66 0.658 2.76 0.0764 0.0391 -0.678 0.701 -- 0.0514 17.9 10.26 4462 -- --
200.26 0.659 2.77 -0.0383 0.109 -0.651 -- -0.733 0.0257 22.1 10.27 4392 -- --
200.61 0.66 2.77 0.0406 0.112 -0.638 -- -- 0.021 22 10.76 4394 -- --
200.83 0.66 2.77 -0.0262 -- -0.659 -- -0.686 0.0214 -- 10.06 4458 -- --
206.88 0.674 2.8 -0.0381 0.0403 -- 0.747 -- -0.11 18 -- -- -- --
207.41 0.674 2.8 -0.0482 0.123 -- -- -- -0.109 22.6 -- -- -- --
201.06 0.66 2.76 0.0639 -- -0.69 -- -- 0.0627 -- 10.05 4443 -- --
200.64 0.66 2.77 -- 0.118 -0.639 -- -- 0.0307 22 10.75 4390 -- --
208.35 0.674 2.79 -0.0459 -- -- -- -- -0.108 -- -- -- -- --
207.48 0.674 2.8 -- 0.123 -- -- -- -0.103 22.6 -- -- -- --
201.2 0.661 2.76 -- -- -0.682 -- -- 0.0623 -- 10.05 4456 -- --
208.41 0.674 2.79 -- -- -- -- -- -0.103 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 189.49 wind 1.0 1440 > th dose independent rect. 15 1
2 189.50 wind 1.0 1440 < th dose independent rect. 15 1
3 190.32 wind 1.0 1440 < th dose dependent rect. 15 1
4 192.64 humidity 90.0 1440 > th dose dependent rect. 14 2
5 192.70 humidity 90.0 1440 > th dose independent rect. 14 2
8 193.54 humidity 90.0 1440 > th dose dependent rect. 11 5
14 193.89 radiation 10.0 4320 < th dose dependent rect. 12 3
16 193.99 radiation 10.0 4320 < th dose dependent rect. 12 1
19 194.67 humidity 90.0 1440 > th dose independent rect. 12 4
26 195.17 wind 3.0 90 > th dose dependent rect. 20 1
31 195.44 humidity 90.0 1440 < th dose independent rect. 15 1
36 195.87 wind 3.0 90 > th dose independent rect. 20 1
41 195.99 wind 5.0 30 > th dose dependent sin 9 NA
43 196.06 wind 7.0 30 < th dose independent sin 9 NA
48 196.36 wind 5.0 90 > th dose dependent rect. 20 15
52 196.56 wind 7.0 30 > th dose independent sin 9 NA
53 196.56 wind 3.0 90 < th dose dependent rect. 16 1
66 196.88 radiation 10.0 4320 > th dose independent rect. 12 1
75 197.17 wind 1.0 30 < th dose dependent rect. 5 1
77 197.19 wind 7.0 30 > th dose independent rect. 18 16
78 197.20 radiation 10.0 4320 < th dose independent rect. 12 1
85 197.39 wind 5.0 1440 > th dose independent rect. 24 9
88 197.40 wind 5.0 1440 < th dose independent rect. 24 9
97 197.53 wind 3.0 90 < th dose independent rect. 16 1
98 197.54 wind 5.0 1440 < th dose independent rect. 24 11
104 197.63 wind 5.0 1440 > th dose independent rect. 24 11
110 197.67 wind 3.0 1440 > th dose dependent rect. 24 10
114 197.72 radiation 10.0 4320 > th dose independent rect. 12 4
128 197.85 radiation 10.0 4320 > th dose independent rect. 12 6
148 197.89 wind 3.0 4320 < th dose independent rect. 15 3
149 197.90 radiation 10.0 4320 < th dose dependent rect. 12 17
150 197.91 radiation 10.0 4320 < th dose dependent rect. 12 13
159 197.93 radiation 10.0 4320 < th dose dependent rect. 12 10
169 197.95 wind 5.0 90 > th dose dependent rect. 2 9
170 197.95 wind 5.0 30 > th dose dependent rect. 21 13
176 197.99 wind 5.0 270 > th dose independent rect. 2 6
178 197.99 wind 7.0 30 < th dose independent rect. 21 23
189 198.05 wind 7.0 30 > th dose independent rect. 21 13
193 198.06 wind 5.0 1440 > th dose dependent rect. 1 7
199 198.11 radiation 10.0 4320 < th dose independent rect. 12 4
200 198.11 wind 5.0 90 > th dose dependent rect. 8 3
241 198.23 radiation 10.0 4320 < th dose independent rect. 12 13
246 198.24 radiation 10.0 4320 < th dose independent rect. 12 6
247 198.24 radiation 10.0 4320 < th dose independent rect. 12 11
272 198.29 wind 1.0 30 < th dose independent rect. 5 1
304 198.35 wind 3.0 720 < th dose dependent rect. 16 4
316 198.40 wind 5.0 90 > th dose independent rect. 9 2
325 198.42 humidity 50.0 720 < th dose dependent rect. 15 1
326 198.43 humidity 90.0 720 > th dose independent rect. 22 1
331 198.44 radiation 40.0 90 > th dose dependent rect. 12 2
367 198.52 radiation 10.0 4320 > th dose independent sin 17 NA
372 198.54 wind 9.0 270 < th dose dependent rect. 22 16
419 198.60 wind 3.0 1440 > th dose independent rect. 24 5
424 198.60 wind 3.0 1440 > th dose dependent rect. 1 4
466 198.66 wind 7.0 1440 < th dose dependent rect. 24 12
482 198.69 humidity 70.0 90 < th dose independent rect. 12 1
498 198.72 wind 5.0 270 < th dose independent rect. 22 16
509 198.74 humidity 90.0 1440 < th dose independent rect. 13 10
526 198.76 wind 3.0 1440 < th dose independent rect. 1 2
527 198.76 precipitation 0.1 1440 < th dose independent rect. 14 2
531 198.76 precipitation 0.1 1440 < th dose dependent rect. 14 2
543 198.79 wind 3.0 1440 < th dose independent rect. 24 4
546 198.79 humidity 50.0 4320 < th dose dependent rect. 14 2
550 198.80 wind 3.0 1440 > th dose independent rect. 1 2
600 198.86 humidity 80.0 43200 > th dose independent rect. 16 6
624 198.90 wind 5.0 90 > th dose independent rect. 4 7
680 198.94 wind 5.0 10 < th dose independent rect. 12 2
682 198.94 precipitation 0.1 30 > th dose independent rect. 19 4
688 198.94 precipitation 0.1 30 > th dose dependent rect. 19 4
696 198.96 precipitation 0.1 720 > th dose independent rect. 15 1
702 198.96 precipitation 0.1 720 > th dose dependent rect. 15 1
704 198.97 wind 5.0 1440 < th dose independent sin 8 NA
730 198.99 humidity 80.0 43200 < th dose independent rect. 16 6
755 199.01 humidity 70.0 30 < th dose independent rect. 17 1
760 199.01 wind 5.0 30 < th dose independent rect. 18 23
766 199.02 wind 5.0 1440 > th dose independent sin 8 NA
792 199.07 radiation 10.0 4320 < th dose independent sin 17 NA
806 199.09 radiation 40.0 30 > th dose independent rect. 12 2
859 199.14 humidity 80.0 43200 < th dose independent rect. 17 4
867 199.15 wind 7.0 1440 < th dose dependent rect. 24 6
880 199.16 radiation 10.0 4320 < th dose dependent sin 19 NA
906 199.20 precipitation 0.1 720 > th dose independent rect. 19 1
958 199.27 humidity 80.0 1440 > th dose dependent rect. 13 10
960 199.27 radiation 1.0 30 > th dose dependent rect. 12 18
995 199.30 wind 3.0 720 > th dose dependent rect. 20 17