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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0192800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : AAA ATPase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.028) R2 : 0.338
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.42 (0.0927) R2dE : 0.343 R2E : 0.333
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0984 (0.0593) R2dN8 : 0.00524 R2N8 : -0.00486
σ : 0.526
deviance : 127.38
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 28
memory length : 912
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
121.46 0.518 3.29 -1.55 0.257 2.7 -0.274 -12.7 0.19 23 31.32 898 -- --
125.61 0.522 3.13 -0.0295 0.201 1.31 -0.085 -- 0.129 21.7 28.61 923 -- --
121.75 0.514 3.28 -1.51 0.264 2.69 -- -12.6 0.188 23 31.52 895 -- --
125.33 0.521 3.12 -0.0253 0.212 1.29 -- -- 0.128 23.2 28.64 912 -- --
125.78 0.522 3.27 -1.5 -- 2.75 -- -12.5 0.202 -- 31.27 892 -- --
177.54 0.625 3.16 0.236 0.47 -- 0.0509 -- 0.0159 22.2 -- -- -- --
177.55 0.624 3.16 0.234 0.469 -- -- -- 0.0158 22.2 -- -- -- --
127.31 0.526 3.13 -0.0415 -- 1.41 -- -- 0.1 -- 28.08 912 -- --
125.3 0.521 3.12 -- 0.213 1.32 -- -- 0.144 23.5 28.74 909 -- --
190.94 0.646 3.14 0.241 -- -- -- -- 0.0169 -- -- -- -- --
179 0.626 3.16 -- 0.471 -- -- -- -0.0103 22.3 -- -- -- --
127.38 0.526 3.13 -- -- 1.42 -- -- 0.0984 -- 28 912 -- --
192.48 0.648 3.15 -- -- -- -- -- -0.00991 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 120.08 temperature 30 720 > th dose independent sin 11 NA
2 120.16 temperature 30 720 < th dose independent sin 11 NA
3 120.17 temperature 30 720 > th dose dependent sin 11 NA
6 120.78 temperature 25 720 > th dose dependent rect. 15 5
9 121.04 temperature 25 720 > th dose dependent rect. 15 18
11 121.33 temperature 30 720 > th dose independent rect. 15 19
49 122.83 temperature 30 720 > th dose independent rect. 15 4
167 124.43 temperature 30 720 < th dose independent rect. 16 15
177 124.97 temperature 30 720 < th dose independent rect. 14 8
180 125.11 temperature 30 720 < th dose independent rect. 12 10
204 125.37 temperature 30 720 < th dose independent rect. 16 7
215 125.71 temperature 30 720 < th dose independent rect. 14 16
269 126.12 temperature 30 720 < th dose independent rect. 16 23
289 126.65 temperature 30 720 < th dose independent rect. 10 14
290 126.67 temperature 30 720 < th dose independent rect. 9 23
297 126.79 temperature 30 720 < th dose independent rect. 3 19
334 127.06 humidity 60 720 < th dose dependent rect. 16 4
356 127.18 temperature 30 720 < th dose independent rect. 12 23
418 127.53 temperature 30 720 < th dose independent rect. 1 23
420 127.54 temperature 30 720 < th dose independent rect. 3 16
496 127.90 temperature 30 720 > th dose independent rect. 9 10
564 128.15 temperature 30 720 < th dose independent rect. 14 23
586 128.26 temperature 30 720 > th dose dependent no NA NA
688 128.35 temperature 30 720 < th dose independent no NA NA
695 128.43 temperature 30 720 > th dose independent no NA NA
806 128.64 radiation 1 720 > th dose dependent rect. 17 13
888 129.12 temperature 30 720 < th dose independent rect. 20 23
901 129.26 humidity 60 720 < th dose independent rect. 16 4
914 129.26 radiation 1 720 > th dose dependent rect. 17 2
930 129.35 temperature 10 720 > th dose dependent rect. 13 7
932 129.36 temperature 30 720 < th dose independent rect. 16 19