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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0192400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0435) R2 : 7.23e-08
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.000526 (0.0917) R2dN8 : 9.34e-08 R2N8 : 7.23e-08
σ : 0.82
deviance : 308.71
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
279.28 0.785 2.93 0.452 0.0851 1.08 -0.804 1.23 0.167 19.2 19.75 650 -- --
282.89 0.783 2.91 0.618 0.0757 0.925 -1.19 -- 0.199 19.3 19.8 649 -- --
280.81 0.78 2.94 0.431 0.0937 1.13 -- 1.48 0.163 20.1 19.72 641 -- --
286.36 0.788 2.9 0.65 0.0667 0.911 -- -- 0.204 20.4 19.8 649 -- --
280.56 0.78 2.94 0.425 -- 1.18 -- 1.68 0.147 -- 19.53 594 -- --
302.27 0.815 2.93 0.293 0.043 -- 1.13 -- 0.0361 7.67 -- -- -- --
305.78 0.819 2.93 0.323 0.0571 -- -- -- 0.0355 10.7 -- -- -- --
286.6 0.788 2.9 0.643 -- 0.891 -- -- 0.2 -- 19.78 649 -- --
296.07 0.801 2.92 -- 0.0358 0.661 -- -- 0.101 20.8 20 689 -- --
305.99 0.817 2.94 0.322 -- -- -- -- 0.0352 -- -- -- -- --
308.53 0.822 2.94 -- 0.0551 -- -- -- -0.00048 10.3 -- -- -- --
296.15 0.801 2.92 -- -- 0.674 -- -- 0.113 -- 19.8 678 -- --
308.71 0.82 2.94 -- -- -- -- -- -0.000526 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 262.20 humidity 80 10 < th dose dependent rect. 4 2
3 262.36 humidity 80 10 < th dose independent rect. 4 2
29 269.86 humidity 80 90 < th dose independent rect. 23 7
30 270.00 humidity 80 30 < th dose independent rect. 22 9
33 270.12 wind 3 10 > th dose dependent rect. 6 1
44 272.16 temperature 20 720 < th dose independent rect. 8 12
47 272.95 humidity 80 90 < th dose independent rect. 1 5
48 273.09 temperature 20 720 < th dose independent rect. 9 10
49 273.30 temperature 20 720 > th dose independent sin 22 NA
52 273.64 humidity 80 270 < th dose dependent rect. 1 5
56 274.20 temperature 20 720 < th dose independent sin 22 NA
58 274.32 wind 3 10 > th dose independent rect. 5 2
61 274.53 humidity 80 10 < th dose independent rect. 2 5
68 274.82 wind 3 10 > th dose dependent rect. 3 4
70 274.89 temperature 20 720 < th dose independent rect. 4 20
87 275.39 humidity 80 270 < th dose dependent rect. 2 1
89 275.41 humidity 80 270 < th dose independent rect. 2 1
110 276.15 temperature 20 720 > th dose independent rect. 11 8
128 276.72 humidity 80 270 < th dose dependent rect. 22 8
153 277.53 temperature 20 720 > th dose independent rect. 7 18
165 277.82 temperature 20 720 > th dose independent rect. 6 15
166 277.85 temperature 20 720 < th dose independent rect. 8 17
177 278.06 humidity 80 10 < th dose dependent rect. 22 9
192 278.43 temperature 20 720 < th dose independent rect. 8 22
204 278.63 temperature 20 720 < th dose independent rect. 18 1
216 278.79 temperature 20 720 < th dose independent rect. 5 16
227 278.98 humidity 90 1440 < th dose dependent rect. 4 1
310 280.02 temperature 20 720 > th dose independent rect. 14 22
311 280.02 temperature 20 720 < th dose dependent rect. 22 1
353 280.56 humidity 80 270 < th dose independent sin 9 NA
375 280.72 temperature 20 720 < th dose independent rect. 22 23
376 280.73 temperature 20 720 < th dose independent no NA NA
386 280.80 humidity 80 270 > th dose independent rect. 22 11
395 280.88 temperature 20 720 < th dose independent rect. 13 23
398 280.90 temperature 20 720 < th dose independent rect. 18 23
401 280.92 temperature 20 720 < th dose independent rect. 11 23
411 280.97 temperature 25 1440 < th dose dependent rect. 11 1
417 280.99 temperature 20 720 > th dose independent rect. 21 23
430 281.11 temperature 20 720 > th dose independent rect. 13 7
432 281.12 temperature 20 720 > th dose independent no NA NA
439 281.15 temperature 20 720 > th dose independent rect. 14 15
445 281.18 temperature 20 720 > th dose independent rect. 14 12
471 281.39 temperature 20 720 < th dose independent rect. 22 1
481 281.45 humidity 80 720 < th dose dependent rect. 22 2
484 281.48 temperature 20 720 > th dose independent rect. 16 23
503 281.63 humidity 80 720 < th dose independent rect. 23 1
547 281.90 temperature 25 720 < th dose dependent rect. 10 20
548 281.91 humidity 90 1440 < th dose independent rect. 4 2
606 282.27 temperature 20 720 < th dose dependent rect. 8 12
628 282.41 humidity 80 270 > th dose independent sin 9 NA
638 282.44 temperature 25 1440 < th dose dependent rect. 10 3
644 282.49 temperature 25 720 < th dose dependent rect. 2 22
654 282.56 temperature 20 720 > th dose independent rect. 16 10
667 282.63 temperature 20 720 < th dose independent rect. 22 3
693 282.76 temperature 25 1440 < th dose independent rect. 4 12
724 282.90 humidity 80 1440 < th dose dependent rect. 22 10
732 282.93 temperature 25 1440 < th dose dependent rect. 5 12
737 282.96 temperature 25 1440 > th dose independent rect. 4 12
758 283.04 temperature 25 1440 < th dose independent rect. 23 18
780 283.10 temperature 20 720 < th dose dependent rect. 8 17
847 283.37 temperature 25 1440 < th dose dependent sin 1 NA
893 283.52 temperature 25 1440 < th dose independent sin 3 NA
927 283.61 wind 5 720 > th dose dependent rect. 19 4
935 283.63 temperature 25 1440 > th dose independent rect. 22 19
941 283.64 temperature 25 720 < th dose dependent rect. 22 23
957 283.67 temperature 20 720 < th dose dependent rect. 13 12
965 283.69 temperature 15 1440 > th dose dependent rect. 4 8
967 283.69 temperature 30 1440 < th dose dependent rect. 23 17
977 283.72 humidity 80 720 > th dose independent rect. 23 3
985 283.73 temperature 25 720 < th dose dependent no NA NA
986 283.73 wind 5 720 > th dose dependent rect. 19 2