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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0192000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : AAA ATPase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.03) R2 : 0.199
β1 : -0.33 (0.117) R2dD : 0.0178 R2D : -0.0262
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.02 (0.322) R2dE : 0.0476 R2E : -0.167
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -23.9 (2.82) R2dD*E : 0.349 R2D*E : 0.131
γ1 : 0.128 (0.0648) R2dN8 : 0.0102 R2N8 : 0.0129
σ : 0.551
deviance : 140.04
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 84.26
memory length : 32
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20
open length of G : 1.02

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
137.73 0.551 3.11 -0.345 0.169 -0.985 -0.624 -24.4 0.119 5.78 84.01 30 20 1
160.86 0.595 3.15 0.0423 0.163 1.16 -0.448 -- 0.115 5.52 97.9 2 20.3 1.46
138.62 0.548 3.11 -0.344 0.169 -0.97 -- -24.1 0.121 6.47 86.72 31 20 1.01
161.22 0.591 3.15 0.0359 0.168 1.16 -- -- 0.124 6.67 94.43 24 20 0.835
140.04 0.551 3.11 -0.33 -- -1.02 -- -23.9 0.128 -- 84.26 32 20 1.02
170.31 0.612 3.13 0.0339 0.0971 -- -0.443 -- 0.205 3.63 -- -- -- --
170.86 0.612 3.13 0.0411 0.102 -- -- -- 0.207 4.71 -- -- -- --
162.66 0.597 3.15 0.0459 -- 1.09 -- -- 0.126 -- 84.26 32 20 1.02
161.26 0.591 3.15 -- 0.167 1.16 -- -- 0.119 6.59 107.8 24 20 0.836
171.4 0.612 3.13 0.045 -- -- -- -- 0.21 -- -- -- -- --
170.9 0.612 3.13 -- 0.102 -- -- -- 0.203 4.7 -- -- -- --
162.72 0.596 3.15 -- -- 1.09 -- -- 0.121 -- 108.8 31 20 1.04
171.46 0.611 3.13 -- -- -- -- -- 0.205 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 137.78 humidity 90.0 30 < th dose independent rect. 20 1
2 137.91 atmosphere 1005.0 30 > th dose independent rect. 20 1
3 137.91 atmosphere 995.0 30 > th dose dependent rect. 20 1
4 137.92 temperature 20.0 30 > th dose independent rect. 20 1
6 137.95 temperature 10.0 30 > th dose dependent rect. 20 1
8 137.97 wind 1.0 30 > th dose independent rect. 20 1
9 137.97 wind 7.0 30 < th dose independent rect. 20 1
11 137.97 temperature 10.0 30 > th dose independent rect. 20 1
13 137.97 temperature 30.0 30 < th dose independent rect. 20 1
14 137.97 humidity 50.0 30 > th dose independent rect. 20 1
18 137.97 atmosphere 1010.0 30 < th dose independent rect. 20 1
20 137.97 radiation 1.0 30 < th dose independent rect. 20 1
25 137.97 precipitation 0.1 30 < th dose independent rect. 20 1
26 137.97 temperature 10.0 30 > th dose independent rect. 21 23
27 137.97 radiation 1.0 30 < th dose dependent rect. 20 1
32 137.97 radiation 10.0 1440 < th dose dependent rect. 21 1
33 137.97 precipitation 0.1 30 < th dose dependent rect. 20 1
36 138.06 humidity 90.0 30 < th dose dependent rect. 20 1
39 138.10 wind 1.0 30 > th dose dependent rect. 20 1
41 138.17 wind 9.0 30 < th dose dependent rect. 20 1
42 138.19 temperature 10.0 1440 > th dose independent rect. 21 1
45 138.19 temperature 30.0 1440 < th dose independent rect. 21 1
49 138.19 humidity 50.0 1440 > th dose independent rect. 21 1
55 138.19 atmosphere 995.0 1440 > th dose independent rect. 21 1
56 138.19 radiation 1.0 1440 < th dose independent rect. 21 1
76 138.19 temperature 10.0 1440 > th dose independent rect. 22 23
81 138.27 humidity 50.0 30 > th dose dependent rect. 20 1
89 138.55 atmosphere 1015.0 30 < th dose dependent rect. 20 1
106 139.76 temperature 30.0 30 < th dose dependent rect. 20 1
151 144.45 wind 9.0 30 < th dose independent rect. 21 23
162 150.35 atmosphere 995.0 30 > th dose independent rect. 21 23
165 150.91 precipitation 0.1 30 < th dose independent rect. 21 23
166 150.91 precipitation 0.1 30 < th dose dependent rect. 21 23
178 154.46 humidity 50.0 30 > th dose independent rect. 21 23
200 157.62 temperature 20.0 30 > th dose dependent rect. 2 1
201 157.79 temperature 20.0 30 > th dose independent rect. 2 1
202 157.79 atmosphere 1005.0 30 > th dose dependent rect. 2 1
204 157.81 atmosphere 1005.0 30 > th dose independent rect. 2 1
213 158.00 wind 3.0 30 < th dose dependent rect. 2 1
215 158.05 wind 3.0 30 < th dose independent rect. 2 1
220 158.15 humidity 80.0 30 > th dose independent rect. 2 1
223 158.21 humidity 50.0 30 > th dose dependent rect. 2 1
227 158.22 temperature 10.0 30 > th dose independent rect. 2 1
229 158.22 temperature 30.0 30 < th dose independent rect. 2 1
230 158.22 humidity 50.0 30 > th dose independent rect. 2 1
235 158.22 atmosphere 1010.0 30 < th dose independent rect. 2 1
237 158.22 radiation 1.0 30 < th dose independent rect. 2 1
242 158.22 precipitation 0.1 30 < th dose independent rect. 2 1
243 158.22 temperature 10.0 30 > th dose independent rect. 3 23
246 158.22 radiation 1.0 30 < th dose dependent rect. 2 1
251 158.22 precipitation 0.1 30 < th dose dependent rect. 2 1
256 158.45 temperature 30.0 30 < th dose independent rect. 21 23
263 158.95 wind 1.0 30 > th dose independent rect. 21 23
264 158.96 atmosphere 1015.0 30 < th dose dependent rect. 2 1
270 159.21 temperature 30.0 30 < th dose dependent rect. 2 1
275 159.58 wind 1.0 30 > th dose independent rect. 2 1
288 160.07 precipitation 0.1 1440 < th dose independent rect. 21 1
290 160.07 precipitation 0.1 1440 < th dose dependent rect. 21 1
309 160.67 temperature 25.0 10 > th dose dependent rect. 20 9
326 161.02 wind 9.0 30 < th dose independent rect. 3 23
405 161.88 radiation 10.0 43200 < th dose dependent rect. 3 1
411 161.94 radiation 1.0 4320 < th dose dependent rect. 3 1
424 162.00 wind 9.0 1440 < th dose independent rect. 3 1
425 162.00 temperature 10.0 1440 > th dose independent rect. 3 1
428 162.00 temperature 30.0 1440 < th dose independent rect. 3 1
432 162.00 humidity 50.0 1440 > th dose independent rect. 3 1
441 162.00 atmosphere 995.0 1440 > th dose independent rect. 3 1
442 162.00 radiation 1.0 1440 < th dose independent rect. 3 1
462 162.00 temperature 10.0 1440 > th dose independent rect. 4 23
518 162.62 temperature 25.0 720 > th dose dependent rect. 20 1
533 163.01 temperature 25.0 90 > th dose independent rect. 1 3
542 163.16 temperature 25.0 720 > th dose independent rect. 20 1
544 163.19 atmosphere 1015.0 30 < th dose independent rect. 21 23
561 163.60 precipitation 0.1 30 < th dose independent rect. 3 23
564 163.60 precipitation 0.1 30 < th dose dependent rect. 3 23
567 163.64 atmosphere 1000.0 720 > th dose independent rect. 21 12
587 163.96 atmosphere 995.0 30 > th dose independent rect. 3 23
595 164.03 atmosphere 995.0 720 > th dose independent rect. 9 12
599 164.14 humidity 60.0 720 > th dose independent rect. 21 12
601 164.15 atmosphere 1000.0 720 > th dose independent rect. 3 6
602 164.15 temperature 25.0 90 > th dose independent rect. 19 10
606 164.16 temperature 30.0 720 < th dose independent rect. 21 12
609 164.17 radiation 1.0 4320 < th dose dependent rect. 22 5
610 164.18 temperature 10.0 720 > th dose independent rect. 9 12
611 164.18 temperature 10.0 720 > th dose independent rect. 21 12
681 164.31 wind 9.0 720 < th dose independent rect. 21 12
692 164.38 atmosphere 1015.0 720 < th dose independent rect. 9 12
696 164.39 atmosphere 1000.0 30 > th dose independent rect. 21 5
707 164.41 atmosphere 1005.0 10 > th dose dependent rect. 2 3
708 164.42 temperature 10.0 1440 > th dose independent rect. 22 5
711 164.42 temperature 30.0 1440 < th dose independent rect. 22 5
715 164.42 humidity 50.0 1440 > th dose independent rect. 22 5
723 164.42 atmosphere 995.0 1440 > th dose independent rect. 22 5
724 164.42 radiation 1.0 1440 < th dose independent rect. 22 5
744 164.42 temperature 10.0 1440 > th dose independent rect. 3 19
766 164.54 wind 9.0 720 < th dose independent rect. 15 6
775 164.59 precipitation 0.1 720 < th dose independent rect. 21 12
777 164.59 precipitation 0.1 720 < th dose dependent rect. 21 12
779 164.60 wind 1.0 720 > th dose independent rect. 9 12
780 164.60 atmosphere 1000.0 90 > th dose independent rect. 21 14
781 164.60 precipitation 0.1 30 < th dose independent rect. 2 19
783 164.60 precipitation 0.1 30 < th dose dependent rect. 2 19
807 164.63 atmosphere 995.0 720 > th dose independent rect. 21 18
813 164.65 temperature 10.0 30 > th dose independent rect. 21 5
814 164.65 temperature 30.0 30 < th dose independent rect. 21 5
815 164.65 humidity 50.0 30 > th dose independent rect. 21 5
819 164.65 radiation 1.0 30 < th dose independent rect. 21 5
824 164.65 temperature 30.0 90 < th dose independent rect. 11 10
825 164.65 temperature 10.0 30 > th dose independent rect. 2 19
827 164.65 atmosphere 1015.0 30 < th dose independent rect. 2 19
829 164.65 radiation 1.0 30 < th dose dependent rect. 21 5
836 164.66 precipitation 0.1 30 < th dose independent rect. 21 5
838 164.66 precipitation 0.1 30 < th dose dependent rect. 21 5
839 164.67 wind 9.0 30 < th dose independent rect. 21 5
849 164.72 atmosphere 995.0 30 > th dose dependent rect. 2 19
852 164.74 temperature 10.0 720 > th dose independent rect. 15 6
853 164.74 temperature 10.0 720 > th dose independent rect. 21 18
854 164.74 atmosphere 995.0 30 > th dose independent rect. 2 19
858 164.76 atmosphere 995.0 720 > th dose independent rect. 15 6
861 164.77 temperature 30.0 720 < th dose independent rect. 3 6
864 164.78 wind 9.0 720 < th dose independent rect. 9 12
866 164.79 humidity 60.0 720 > th dose independent rect. 3 6
868 164.79 humidity 50.0 30 > th dose independent rect. 3 23
869 164.80 temperature 10.0 90 > th dose dependent rect. 19 12
870 164.81 atmosphere 995.0 720 > th dose independent rect. 9 18
873 164.82 wind 9.0 720 < th dose independent rect. 3 6
874 164.82 temperature 10.0 720 > th dose independent rect. 3 6
877 164.82 temperature 10.0 720 > th dose independent rect. 9 18
891 164.88 precipitation 0.1 720 < th dose independent rect. 15 6
892 164.88 precipitation 0.1 720 < th dose independent rect. 9 12
894 164.88 precipitation 0.1 720 < th dose dependent rect. 15 6
895 164.88 precipitation 0.1 720 < th dose dependent rect. 9 12
896 164.89 wind 9.0 30 < th dose independent rect. 2 19
897 164.90 precipitation 0.1 720 < th dose independent rect. 3 6
898 164.90 temperature 25.0 10 > th dose independent rect. 20 11
899 164.90 temperature 30.0 270 < th dose independent rect. 9 12
901 164.90 precipitation 0.1 720 < th dose dependent rect. 3 6
902 164.91 atmosphere 995.0 90 > th dose independent rect. 11 10
903 164.91 temperature 25.0 720 > th dose dependent rect. 3 6
916 164.97 temperature 10.0 720 > th dose dependent rect. 19 2
919 164.98 wind 9.0 90 < th dose independent rect. 21 14
920 164.99 temperature 10.0 90 > th dose independent rect. 11 10
922 164.99 atmosphere 1015.0 90 < th dose independent rect. 11 10
923 164.99 temperature 10.0 90 > th dose independent rect. 21 14
924 164.99 humidity 50.0 90 > th dose independent rect. 21 14
927 165.00 temperature 10.0 30 > th dose dependent rect. 21 5
930 165.02 wind 1.0 720 > th dose independent rect. 15 6
946 165.04 atmosphere 1015.0 720 < th dose independent rect. 15 6
947 165.04 temperature 30.0 90 < th dose independent rect. 21 14
959 165.06 humidity 60.0 10 > th dose independent rect. 14 12
960 165.06 precipitation 0.1 720 < th dose independent rect. 9 18
962 165.06 radiation 1.0 90 < th dose dependent rect. 9 12
964 165.06 precipitation 0.1 720 < th dose dependent rect. 9 18
966 165.07 precipitation 0.1 90 < th dose independent rect. 21 14
968 165.07 precipitation 0.1 90 < th dose dependent rect. 21 14
970 165.08 atmosphere 1005.0 10 > th dose dependent rect. 2 5