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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0191900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0251) R2 : 0.224
β1 : -0.107 (0.0931) R2dD : 0.00239 R2D : -0.00334
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.48 (0.184) R2dE : 0.115 R2E : 0.0593
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -12.8 (1.33) R2dD*E : 0.166 R2D*E : 0.105
γ1 : 0.0671 (0.0538) R2dN8 : 0.00357 R2N8 : 4.03e-05
σ : 0.473
deviance : 101.85
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.86
memory length : 32
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.16
open length of G : 1.07

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
100.6 0.471 3.17 -0.109 0.154 1.41 -0.157 -12.7 0.0618 6.15 25.04 30 7.16 1.01
120.56 0.511 3.17 0.024 0.145 1.08 -0.457 -- 0.0448 5.72 24.62 33 6.98 1.43
100.63 0.471 3.17 -0.111 0.155 1.41 -- -12.8 0.0626 6.64 24.94 33 7.11 0.981
121 0.512 3.17 0.022 0.146 1.07 -- -- 0.0456 6.6 24.36 30 7 1.38
101.85 0.473 3.18 -0.107 -- 1.48 -- -12.8 0.0671 -- 24.86 32 7.16 1.07
128.34 0.531 3.17 0.0252 0.22 -- -0.389 -- 0.0322 6.36 -- -- -- --
128.65 0.531 3.17 0.0214 0.22 -- -- -- 0.034 6.92 -- -- -- --
121.97 0.514 3.18 0.0253 -- 1.14 -- -- 0.0369 -- 24.63 29 6.96 1.41
121.01 0.512 3.17 -- 0.146 1.07 -- -- 0.043 6.59 24.36 30 6.99 1.4
131.19 0.535 3.18 0.026 -- -- -- -- 0.0381 -- -- -- -- --
128.66 0.531 3.17 -- 0.22 -- -- -- 0.0316 6.92 -- -- -- --
121.99 0.514 3.18 -- -- 1.14 -- -- 0.0334 -- 24.7 28 6.96 1.42
131.2 0.535 3.18 -- -- -- -- -- 0.0352 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 100.62 temperature 25.0 30 > th dose independent rect. 7 1
3 109.24 humidity 80.0 10 < th dose independent rect. 7 1
9 110.05 humidity 80.0 10 < th dose independent rect. 24 8
13 110.57 radiation 10.0 30 > th dose independent rect. 7 1
14 111.85 temperature 25.0 10 > th dose dependent rect. 7 1
55 114.46 atmosphere 1005.0 30 > th dose dependent rect. 2 1
58 114.56 atmosphere 1005.0 30 > th dose independent rect. 2 1
59 114.56 temperature 20.0 30 > th dose dependent rect. 2 1
62 114.62 wind 3.0 30 < th dose dependent rect. 2 1
64 114.67 temperature 20.0 30 > th dose independent rect. 2 1
67 114.71 wind 3.0 30 < th dose independent rect. 2 1
74 114.80 temperature 25.0 30 < th dose independent rect. 2 1
75 114.82 humidity 80.0 30 > th dose independent rect. 2 1
77 114.84 temperature 10.0 30 > th dose independent rect. 2 1
80 114.84 humidity 50.0 30 > th dose independent rect. 2 1
84 114.84 atmosphere 1010.0 30 < th dose independent rect. 2 1
86 114.84 radiation 1.0 30 < th dose independent rect. 2 1
91 114.84 precipitation 0.1 30 < th dose independent rect. 2 1
92 114.84 temperature 10.0 30 > th dose independent rect. 3 23
93 114.84 humidity 50.0 30 > th dose dependent rect. 2 1
95 114.84 radiation 1.0 30 < th dose dependent rect. 2 1
100 114.84 precipitation 0.1 30 < th dose dependent rect. 2 1
105 115.27 radiation 1.0 4320 < th dose dependent rect. 3 1
107 115.34 atmosphere 1015.0 30 < th dose dependent rect. 2 1
108 115.34 radiation 10.0 43200 < th dose dependent rect. 3 1
112 115.39 temperature 30.0 30 < th dose dependent rect. 2 1
118 115.41 wind 9.0 1440 < th dose independent rect. 3 1
119 115.41 temperature 10.0 1440 > th dose independent rect. 3 1
122 115.41 temperature 30.0 1440 < th dose independent rect. 3 1
126 115.41 humidity 50.0 1440 > th dose independent rect. 3 1
135 115.41 atmosphere 995.0 1440 > th dose independent rect. 3 1
136 115.41 radiation 1.0 1440 < th dose independent rect. 3 1
156 115.41 temperature 10.0 1440 > th dose independent rect. 4 23
173 115.82 wind 1.0 30 > th dose independent rect. 2 1
187 116.50 atmosphere 1000.0 30 > th dose independent rect. 3 23
228 117.24 wind 3.0 10 < th dose dependent rect. 7 1
232 117.80 precipitation 0.1 30 < th dose independent rect. 3 23
233 117.80 precipitation 0.1 30 < th dose dependent rect. 3 23
234 117.87 wind 9.0 30 < th dose independent rect. 3 23
241 118.77 atmosphere 1005.0 30 > th dose independent rect. 7 1
246 119.22 wind 7.0 4320 > th dose independent rect. 1 1
251 119.22 wind 7.0 4320 > th dose dependent rect. 1 1
268 119.84 wind 3.0 10 < th dose independent rect. 7 1
273 120.03 radiation 20.0 10 < th dose independent rect. 7 1
274 120.17 wind 1.0 10 > th dose independent rect. 8 23
275 120.18 temperature 20.0 30 > th dose dependent rect. 2 6
278 120.28 humidity 50.0 30 > th dose independent rect. 3 23
292 120.93 wind 1.0 720 < th dose dependent rect. 21 2
302 121.28 wind 1.0 720 < th dose dependent rect. 14 10
308 121.44 wind 1.0 720 < th dose independent rect. 22 1
319 121.66 wind 9.0 4320 > th dose independent rect. 19 1
320 121.66 wind 9.0 4320 > th dose dependent rect. 19 1
322 121.70 humidity 80.0 10 < th dose independent rect. 20 12
323 121.80 wind 1.0 720 < th dose dependent rect. 2 1
342 121.93 radiation 10.0 10 > th dose independent sin 11 NA
367 121.98 temperature 30.0 30 < th dose independent rect. 3 23
370 122.10 radiation 10.0 30 < th dose independent rect. 3 23
371 122.10 radiation 10.0 30 < th dose dependent rect. 3 23
374 122.16 temperature 25.0 90 < th dose independent rect. 6 1
381 122.19 humidity 90.0 10 < th dose dependent rect. 7 1
389 122.28 wind 3.0 10 < th dose dependent rect. 2 6
399 122.39 atmosphere 1000.0 10 > th dose independent rect. 8 23
421 122.55 humidity 90.0 90 < th dose independent rect. 2 1
439 122.64 atmosphere 995.0 720 > th dose independent rect. 23 16
441 122.66 wind 1.0 30 > th dose independent rect. 7 1
446 122.69 radiation 40.0 10 < th dose independent rect. 7 1
460 122.86 wind 1.0 720 < th dose independent rect. 15 8
462 122.87 humidity 70.0 30 > th dose independent rect. 7 1
463 122.87 wind 1.0 30 < th dose independent rect. 24 3
467 122.90 wind 1.0 720 < th dose independent rect. 2 1
498 123.03 atmosphere 1005.0 30 > th dose independent rect. 2 6
500 123.05 precipitation 0.1 10 < th dose independent rect. 7 1
501 123.05 precipitation 0.1 10 < th dose dependent rect. 7 1
505 123.06 temperature 10.0 10 > th dose independent rect. 7 1
507 123.06 temperature 30.0 10 < th dose independent rect. 7 1
508 123.06 humidity 50.0 10 > th dose independent rect. 7 1
510 123.06 atmosphere 995.0 10 > th dose independent rect. 7 1
511 123.06 atmosphere 1015.0 10 < th dose independent rect. 7 1
512 123.06 temperature 10.0 10 > th dose independent rect. 8 23
517 123.08 precipitation 0.1 30 < th dose independent rect. 8 23
519 123.08 precipitation 0.1 30 < th dose dependent rect. 8 23
530 123.09 temperature 10.0 720 > th dose independent rect. 15 8
531 123.09 temperature 10.0 720 > th dose independent rect. 23 16
538 123.12 wind 9.0 1440 < th dose independent rect. 8 1
541 123.12 temperature 10.0 1440 > th dose independent rect. 8 1
546 123.12 humidity 50.0 1440 > th dose independent rect. 8 1
548 123.12 atmosphere 995.0 1440 > th dose independent rect. 8 1
551 123.12 atmosphere 1015.0 1440 < th dose independent rect. 8 1
552 123.12 temperature 10.0 1440 > th dose independent rect. 9 23
560 123.16 atmosphere 995.0 10 > th dose dependent rect. 7 1
565 123.18 wind 9.0 30 < th dose independent rect. 8 23
567 123.20 wind 1.0 720 > th dose independent rect. 13 15
568 123.20 wind 3.0 30 < th dose dependent rect. 6 21
572 123.23 temperature 25.0 720 > th dose independent rect. 20 1
581 123.26 precipitation 0.1 720 < th dose independent rect. 15 8
584 123.26 precipitation 0.1 720 < th dose dependent rect. 15 8
587 123.27 humidity 50.0 720 > th dose independent rect. 3 8
589 123.29 temperature 10.0 720 > th dose independent rect. 3 8
590 123.29 atmosphere 995.0 720 > th dose independent rect. 3 8
591 123.29 temperature 10.0 720 > th dose independent rect. 11 16
604 123.37 wind 9.0 30 < th dose dependent rect. 19 13
613 123.46 wind 1.0 720 > th dose independent sin 18 NA
615 123.46 atmosphere 995.0 720 > th dose independent rect. 15 8
616 123.46 atmosphere 1015.0 30 < th dose independent rect. 3 23
620 123.50 humidity 90.0 30 < th dose dependent rect. 3 5
623 123.51 precipitation 0.1 1440 < th dose independent rect. 8 1
624 123.51 precipitation 0.1 1440 < th dose dependent rect. 8 1
632 123.56 temperature 25.0 270 > th dose independent rect. 23 4
640 123.59 wind 9.0 720 < th dose independent rect. 3 8
644 123.62 atmosphere 995.0 720 > th dose independent rect. 11 16
646 123.63 temperature 20.0 30 > th dose dependent rect. 19 13
648 123.65 humidity 50.0 30 > th dose independent rect. 8 23
658 123.71 wind 1.0 720 < th dose independent rect. 11 16
660 123.72 atmosphere 1015.0 30 < th dose dependent rect. 7 1
667 123.75 wind 7.0 4320 < th dose independent rect. 1 1
672 123.77 temperature 20.0 30 > th dose dependent rect. 22 10
676 123.79 wind 1.0 30 < th dose independent rect. 21 6
680 123.79 wind 1.0 720 < th dose independent rect. 15 12
701 123.84 wind 1.0 720 < th dose independent rect. 11 13
708 123.86 wind 9.0 720 < th dose independent rect. 19 8
717 123.88 wind 1.0 10 < th dose independent rect. 13 14
718 123.88 precipitation 0.1 720 < th dose independent rect. 11 16
720 123.88 precipitation 0.1 720 < th dose dependent rect. 11 16
721 123.89 wind 3.0 30 < th dose independent rect. 2 6
722 123.89 atmosphere 995.0 720 > th dose independent rect. 7 8
734 123.90 radiation 40.0 30 < th dose dependent rect. 7 1
748 123.94 wind 1.0 720 > th dose independent rect. 17 8
757 123.97 wind 1.0 10 > th dose independent rect. 23 7
760 123.99 wind 1.0 720 < th dose independent sin 18 NA
772 124.04 wind 1.0 720 > th dose independent rect. 18 10
778 124.06 wind 1.0 720 < th dose independent rect. 19 8
779 124.06 wind 1.0 720 > th dose independent rect. 8 20
788 124.07 radiation 1.0 90 > th dose independent rect. 8 22
819 124.15 wind 1.0 720 < th dose dependent rect. 10 18
821 124.16 wind 1.0 720 < th dose dependent sin 18 NA
834 124.20 precipitation 0.1 720 < th dose independent rect. 19 8
835 124.20 precipitation 0.1 720 < th dose dependent rect. 19 8
843 124.21 wind 1.0 10 < th dose independent rect. 6 21
846 124.21 temperature 25.0 270 > th dose dependent rect. 23 4
847 124.22 temperature 10.0 720 > th dose independent rect. 7 8
848 124.22 atmosphere 1015.0 720 < th dose independent rect. 7 8
850 124.22 temperature 10.0 720 > th dose independent rect. 15 16
857 124.24 wind 1.0 720 > th dose independent rect. 21 7
858 124.24 temperature 10.0 720 > th dose independent rect. 19 8
859 124.24 temperature 30.0 720 < th dose independent rect. 19 8
860 124.24 humidity 50.0 720 > th dose independent rect. 19 8
861 124.24 atmosphere 995.0 720 > th dose independent rect. 19 8
862 124.24 radiation 1.0 720 < th dose independent rect. 19 8
867 124.24 temperature 10.0 720 > th dose independent rect. 3 16
868 124.24 radiation 1.0 720 < th dose dependent rect. 19 8
873 124.24 temperature 10.0 30 > th dose dependent rect. 19 13
883 124.27 atmosphere 995.0 720 > th dose independent rect. 3 16
885 124.27 wind 1.0 720 < th dose dependent rect. 14 14
888 124.28 atmosphere 1000.0 30 > th dose dependent rect. 2 6
894 124.30 temperature 25.0 30 > th dose independent rect. 19 13
898 124.31 wind 9.0 720 < th dose independent rect. 15 8
899 124.31 wind 1.0 10 > th dose independent rect. 21 9
903 124.31 wind 3.0 30 < th dose dependent rect. 2 10
907 124.32 atmosphere 995.0 720 > th dose independent rect. 15 16
944 124.40 wind 1.0 10 > th dose independent rect. 16 14
964 124.44 wind 5.0 10 < th dose dependent rect. 16 16
965 124.44 atmosphere 995.0 30 > th dose dependent rect. 3 23
971 124.45 wind 1.0 720 < th dose dependent rect. 20 8
978 124.46 precipitation 0.1 720 < th dose independent rect. 7 8
980 124.46 precipitation 0.1 720 < th dose dependent rect. 7 8
985 124.47 precipitation 0.1 720 < th dose independent rect. 15 16
988 124.47 precipitation 0.1 720 < th dose dependent rect. 15 16