Os07g0190700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0190700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.69 | 0.344 | 2.93 | 0.139 | 0.126 | 0.105 | 0.309 | 0.364 | -0.013 | 3.78 | 25.26 | 106 | -- | -- |
| 54.14 | 0.343 | 2.94 | 0.0642 | 0.155 | 0.151 | 0.199 | -- | -0.0569 | 3.68 | 25.1 | 107 | -- | -- |
| 53.93 | 0.342 | 2.93 | 0.138 | 0.125 | 0.0997 | -- | 0.295 | -0.0107 | 3.37 | 25.24 | 105 | -- | -- |
| 54.1 | 0.343 | 2.94 | 0.0401 | 0.124 | 0.118 | -- | -- | -0.0461 | 3.17 | 25.1 | 107 | -- | -- |
| 54.3 | 0.345 | 2.91 | 0.165 | -- | -0.0499 | -- | 0.455 | 0.0385 | -- | 26.8 | 65 | -- | -- |
| 54.87 | 0.347 | 2.93 | 0.0675 | 0.0341 | -- | 0.13 | -- | 0.00672 | 4.87 | -- | -- | -- | -- |
| 54.88 | 0.347 | 2.93 | 0.0667 | 0.0404 | -- | -- | -- | 0.00595 | 2.62 | -- | -- | -- | -- |
| 54.64 | 0.344 | 2.93 | 0.0826 | -- | -0.07 | -- | -- | 0.0137 | -- | 28.4 | 111 | -- | -- |
| 54.12 | 0.343 | 2.94 | -- | 0.125 | 0.121 | -- | -- | -0.0538 | 3.44 | 25.14 | 107 | -- | -- |
| 54.97 | 0.346 | 2.93 | 0.0684 | -- | -- | -- | -- | 0.00697 | -- | -- | -- | -- | -- |
| 55 | 0.347 | 2.93 | -- | 0.0417 | -- | -- | -- | -0.00147 | 2.64 | -- | -- | -- | -- |
| 54.79 | 0.345 | 2.93 | -- | -- | 0.0624 | -- | -- | -0.0268 | -- | 23.9 | 88 | -- | -- |
| 55.1 | 0.346 | 2.93 | -- | -- | -- | -- | -- | -0.000619 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.17 | temperature | 25.0 | 30 | > th | dose independent | rect. | 23 | 1 |
| 3 | 49.35 | temperature | 25.0 | 90 | > th | dose independent | rect. | 22 | 10 |
| 10 | 50.15 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 21 | 1 |
| 11 | 50.15 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 21 | 1 |
| 21 | 50.70 | temperature | 25.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 32 | 50.96 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 35 | 51.04 | wind | 1.0 | 10 | < th | dose dependent | rect. | 12 | 2 |
| 39 | 51.13 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 23 | 9 |
| 42 | 51.18 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 52 | 51.30 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 21 | 23 |
| 60 | 51.33 | wind | 3.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 63 | 51.35 | wind | 1.0 | 10 | < th | dose independent | rect. | 12 | 3 |
| 77 | 51.39 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 20 | 3 |
| 81 | 51.41 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 83 | 51.42 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 86 | 51.43 | humidity | 90.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 93 | 51.44 | wind | 3.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 94 | 51.44 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 20 | 1 |
| 103 | 51.45 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 105 | 51.45 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 106 | 51.45 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 1 |
| 112 | 51.46 | wind | 9.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 113 | 51.46 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 115 | 51.46 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 116 | 51.46 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 120 | 51.46 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 122 | 51.46 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 124 | 51.46 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 129 | 51.46 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 130 | 51.46 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 137 | 51.46 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 142 | 51.46 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 147 | 51.47 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 159 | 51.48 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 166 | 51.50 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 169 | 51.50 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 173 | 51.50 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 179 | 51.50 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 180 | 51.50 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 202 | 51.50 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 207 | 51.50 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 208 | 51.50 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 211 | 51.51 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 219 | 51.52 | radiation | 10.0 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 239 | 51.53 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 246 | 51.54 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 4 |
| 259 | 51.56 | radiation | 20.0 | 10 | > th | dose independent | rect. | 7 | 2 |
| 329 | 51.65 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 10 | 1 |
| 351 | 51.67 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 359 | 51.69 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 21 | 23 |
| 362 | 51.69 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 395 | 51.75 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 7 | 6 |
| 438 | 51.85 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 20 | 12 |
| 493 | 52.08 | wind | 9.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 527 | 52.26 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 1 |
| 530 | 52.27 | temperature | 25.0 | 90 | > th | dose independent | sin | 9 | NA |
| 555 | 52.30 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 7 | 1 |
| 576 | 52.34 | humidity | 50.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 658 | 52.49 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 19 | 4 |
| 676 | 52.51 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 685 | 52.53 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 723 | 52.55 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 7 | 6 |
| 744 | 52.58 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 753 | 52.60 | humidity | 90.0 | 30 | < th | dose independent | rect. | 7 | 1 |
| 789 | 52.64 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 6 |
| 793 | 52.64 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 802 | 52.66 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 9 | 8 |
| 818 | 52.66 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 9 | 8 |
| 833 | 52.67 | radiation | 20.0 | 10 | > th | dose independent | sin | 11 | NA |
| 839 | 52.68 | temperature | 25.0 | 90 | < th | dose independent | sin | 9 | NA |
| 858 | 52.69 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 14 |
| 890 | 52.69 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 14 |
| 897 | 52.71 | radiation | 20.0 | 10 | < th | dose independent | sin | 11 | NA |
| 945 | 52.76 | wind | 3.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 951 | 52.77 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 4 | 4 |
| 973 | 52.81 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 3 | 6 |