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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0188700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to EXO.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.42 (0.0381) R2 : 0.00121
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0595 (0.0803) R2dN8 : 0.00156 R2N8 : 0.00121
σ : 0.718
deviance : 236.53
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
196.53 0.659 3.61 -2.09 0.503 1.97 0.00316 -11.1 0.0265 23.4 30.32 4040 -- --
210.6 0.676 3.52 -0.246 0.672 0.624 0.114 -- -0.237 23.6 23.6 4813 -- --
196.53 0.653 3.61 -2.09 0.503 1.97 -- -11.1 0.0265 23.4 30.32 4040 -- --
203.72 0.665 3.49 -0.49 0.545 0.616 -- -- -0.275 23.3 25.1 8092 -- --
211.84 0.678 3.61 -2.14 -- 2.05 -- -11.1 -0.00392 -- 30.1 3967 -- --
215.55 0.688 3.44 -0.214 0.563 -- 0.0501 -- -0.0877 23.5 -- -- -- --
215.56 0.688 3.44 -0.216 0.563 -- -- -- -0.0879 23.5 -- -- -- --
218.18 0.688 3.47 -0.401 -- 0.627 -- -- -0.271 -- 29.18 8228 -- --
209.45 0.674 3.46 -- 0.531 0.42 -- -- -0.191 23.5 25.5 9265 -- --
235.46 0.717 3.42 -0.201 -- -- -- -- -0.0818 -- -- -- -- --
216.79 0.689 3.43 -- 0.561 -- -- -- -0.0639 23.5 -- -- -- --
221.69 0.693 3.46 -- -- 0.578 -- -- -0.2 -- 31.89 8398 -- --
236.53 0.718 3.42 -- -- -- -- -- -0.0595 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 194.58 wind 9 43200 > th dose independent rect. 20 20
2 194.74 wind 9 43200 > th dose independent rect. 20 18
5 194.79 wind 9 43200 < th dose independent rect. 20 20
7 194.88 wind 9 43200 < th dose independent rect. 20 18
16 195.03 wind 9 43200 > th dose independent rect. 1 15
17 195.03 wind 7 43200 > th dose dependent rect. 6 8
19 195.04 wind 7 43200 > th dose dependent rect. 8 6
21 195.05 wind 7 43200 > th dose dependent rect. 23 17
22 195.07 wind 7 43200 > th dose dependent sin 3 NA
25 195.07 wind 7 43200 > th dose dependent rect. 21 19
29 195.08 wind 7 43200 > th dose dependent rect. 1 14
41 195.13 wind 9 43200 > th dose independent sin 2 NA
47 195.15 wind 7 43200 > th dose dependent rect. 4 11
50 195.16 wind 9 43200 > th dose independent rect. 6 10
65 195.21 wind 9 43200 < th dose independent sin 3 NA
79 195.26 wind 9 43200 < th dose independent rect. 1 15
85 195.28 wind 9 43200 < th dose independent rect. 8 6
98 195.33 wind 9 43200 < th dose independent rect. 5 11
103 195.34 wind 9 43200 > th dose independent rect. 9 5
125 195.40 wind 9 43200 > th dose independent rect. 23 23
128 195.41 wind 9 43200 > th dose independent rect. 1 23
133 195.42 wind 9 43200 > th dose independent rect. 12 23
142 195.45 wind 9 43200 > th dose independent no NA NA
144 195.45 wind 9 43200 > th dose independent rect. 6 23
152 195.46 wind 9 43200 > th dose independent rect. 4 23
190 195.54 wind 9 43200 > th dose independent rect. 6 18
225 195.60 wind 9 43200 > th dose dependent rect. 10 22
280 195.73 wind 9 43200 > th dose dependent sin 19 NA
287 195.75 wind 9 43200 < th dose independent rect. 12 23
294 195.78 radiation 30 4320 < th dose dependent rect. 18 11
303 195.82 wind 9 43200 < th dose independent rect. 1 23
313 195.84 wind 9 43200 < th dose independent rect. 23 23
318 195.85 wind 9 43200 > th dose dependent rect. 10 8
320 195.85 wind 9 43200 > th dose dependent rect. 10 14
325 195.86 wind 9 43200 < th dose independent rect. 5 23
326 195.86 wind 9 43200 > th dose dependent rect. 10 12
330 195.87 wind 9 43200 < th dose independent rect. 15 23
334 195.88 wind 9 43200 < th dose independent no NA NA
340 195.89 wind 9 43200 < th dose independent rect. 5 19
370 195.94 atmosphere 1000 43200 < th dose dependent rect. 14 1
435 196.12 wind 9 43200 > th dose dependent rect. 12 20
481 196.26 atmosphere 1000 43200 < th dose dependent rect. 9 8
482 196.26 wind 7 43200 > th dose dependent rect. 15 23
504 196.33 wind 7 43200 > th dose dependent rect. 23 23
507 196.35 wind 7 43200 > th dose dependent rect. 1 23
522 196.39 wind 7 43200 > th dose dependent rect. 6 23
523 196.40 radiation 30 4320 < th dose dependent rect. 18 2
527 196.41 wind 7 43200 > th dose dependent no NA NA
530 196.41 wind 7 43200 > th dose dependent rect. 4 20
532 196.41 wind 7 43200 > th dose dependent rect. 4 23
543 196.45 wind 7 43200 > th dose dependent rect. 6 18
544 196.45 wind 7 43200 > th dose dependent rect. 6 21
599 196.55 wind 7 43200 > th dose dependent rect. 6 16
681 196.87 temperature 30 4320 > th dose independent rect. 17 16
709 196.98 atmosphere 1000 43200 < th dose dependent sin 0 NA
725 197.09 radiation 10 4320 < th dose dependent rect. 18 4
761 197.21 atmosphere 1000 43200 < th dose dependent rect. 8 1
841 197.42 temperature 30 4320 < th dose independent rect. 17 17
853 197.44 wind 1 43200 > th dose dependent rect. 9 2
855 197.45 wind 1 43200 > th dose dependent rect. 6 8
857 197.46 atmosphere 1000 43200 > th dose independent rect. 6 1
867 197.49 atmosphere 1000 43200 < th dose independent rect. 6 1
898 197.56 temperature 30 4320 > th dose independent rect. 17 19
903 197.59 temperature 30 4320 > th dose independent sin 10 NA
915 197.63 wind 9 43200 < th dose dependent rect. 6 8
938 197.70 wind 9 43200 < th dose dependent rect. 9 2
945 197.73 atmosphere 995 43200 < th dose dependent rect. 14 9
946 197.74 atmosphere 1000 43200 > th dose independent rect. 9 1
948 197.74 wind 1 43200 > th dose dependent rect. 4 11
954 197.75 temperature 30 4320 < th dose independent rect. 17 19
955 197.75 wind 1 43200 > th dose dependent rect. 2 13
967 197.78 temperature 30 4320 < th dose independent sin 10 NA
969 197.78 temperature 30 4320 > th dose dependent sin 10 NA
976 197.80 temperature 30 4320 > th dose dependent rect. 15 21
979 197.81 wind 5 43200 < th dose dependent rect. 9 2
983 197.82 wind 3 43200 > th dose dependent rect. 23 17
991 197.84 wind 9 43200 < th dose dependent rect. 6 6
995 197.86 wind 3 43200 > th dose independent rect. 9 3