Os07g0188200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0188200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 260.04 | 0.758 | 6.17 | -2.57 | 2.25 | -1.15 | -0.417 | 2.21 | -0.998 | 7.73 | 29.03 | 6161 | -- | -- |
| 261.87 | 0.754 | 6.14 | -2 | 2.22 | -0.941 | -0.418 | -- | -0.956 | 7.78 | 28.6 | 6116 | -- | -- |
| 259.24 | 0.75 | 6.17 | -2.78 | 2.22 | -1.23 | -- | 2.99 | -0.976 | 7.7 | 29.21 | 6022 | -- | -- |
| 261.61 | 0.753 | 6.1 | -1.94 | 2.2 | -0.89 | -- | -- | -0.851 | 7.79 | 28.8 | 5998 | -- | -- |
| 466.91 | 1.01 | 6.23 | -2.62 | -- | -1.21 | -- | 3.28 | -0.929 | -- | 34.3 | 7108 | -- | -- |
| 299.51 | 0.811 | 6.07 | -1.62 | 2.18 | -- | -0.442 | -- | -0.699 | 7.79 | -- | -- | -- | -- |
| 300.07 | 0.811 | 6.07 | -1.64 | 2.18 | -- | -- | -- | -0.698 | 7.79 | -- | -- | -- | -- |
| 485.35 | 1.03 | 6.15 | -1.96 | -- | -1.13 | -- | -- | -0.808 | -- | 34.43 | 7215 | -- | -- |
| 353.24 | 0.875 | 6.02 | -- | 2.15 | -0.626 | -- | -- | -0.466 | 7.82 | 30.39 | 6093 | -- | -- |
| 556.73 | 1.1 | 6.12 | -1.61 | -- | -- | -- | -- | -0.668 | -- | -- | -- | -- | -- |
| 370.64 | 0.901 | 6.03 | -- | 2.17 | -- | -- | -- | -0.516 | 7.84 | -- | -- | -- | -- |
| 577.67 | 1.12 | 6.11 | -- | -- | -0.894 | -- | -- | -0.561 | -- | 34.6 | 7224 | -- | -- |
| 625.1 | 1.17 | 6.08 | -- | -- | -- | -- | -- | -0.489 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 256.76 | radiation | 10 | 14400 | < th | dose dependent | rect. | 11 | 5 |
| 2 | 256.83 | radiation | 10 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 5 | 257.88 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 7 | 258.06 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 14 | 258.29 | humidity | 80 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 39 | 258.89 | humidity | 70 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 41 | 258.90 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 13 |
| 55 | 258.91 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 91 | 259.30 | humidity | 60 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 100 | 259.54 | radiation | 10 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 118 | 259.65 | temperature | 30 | 14400 | > th | dose independent | sin | 14 | NA |
| 135 | 259.71 | temperature | 30 | 14400 | < th | dose independent | sin | 14 | NA |
| 223 | 260.09 | radiation | 10 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 241 | 260.15 | radiation | 10 | 14400 | > th | dose independent | rect. | 11 | 19 |
| 261 | 260.26 | radiation | 10 | 14400 | > th | dose independent | sin | 22 | NA |
| 292 | 260.30 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 342 | 260.47 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 3 |
| 346 | 260.50 | radiation | 10 | 14400 | < th | dose dependent | rect. | 10 | 18 |
| 349 | 260.51 | radiation | 10 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 355 | 260.51 | radiation | 10 | 14400 | < th | dose dependent | rect. | 10 | 14 |
| 356 | 260.51 | radiation | 10 | 14400 | < th | dose dependent | rect. | 10 | 16 |
| 425 | 260.71 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 429 | 260.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 481 | 260.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 15 |
| 489 | 260.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 495 | 260.95 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 511 | 261.00 | radiation | 10 | 14400 | > th | dose independent | no | NA | NA |
| 567 | 261.00 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 659 | 261.19 | temperature | 25 | 14400 | > th | dose dependent | rect. | 14 | 10 |
| 663 | 261.22 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 701 | 261.22 | temperature | 30 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 802 | 261.27 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 914 | 261.35 | humidity | 80 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 931 | 261.43 | radiation | 10 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 955 | 261.54 | humidity | 70 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 971 | 261.60 | temperature | 25 | 14400 | > th | dose dependent | sin | 18 | NA |