Os07g0187900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0187900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 210.59 | 0.682 | 8.73 | -1.22 | 1.12 | 1.34 | -0.166 | -3.65 | 0.725 | 16.5 | 25.25 | 4099 | -- | -- |
| 208.34 | 0.672 | 8.71 | -0.739 | 1.09 | 1.13 | -0.00994 | -- | 0.509 | 16.7 | 19.46 | 10931 | -- | -- |
| 210.49 | 0.676 | 8.74 | -1.36 | 1.12 | 1.43 | -- | -4.55 | 0.747 | 16.5 | 26 | 4117 | -- | -- |
| 208.32 | 0.672 | 8.72 | -0.74 | 1.11 | 1.13 | -- | -- | 0.501 | 16.7 | 19.63 | 10943 | -- | -- |
| 273.67 | 0.775 | 8.66 | -0.486 | -- | 1.16 | -- | -1.98 | 0.746 | -- | 24.5 | 3413 | -- | -- |
| 241.04 | 0.728 | 8.62 | -0.0647 | 1.07 | -- | 0.193 | -- | 0.934 | 17 | -- | -- | -- | -- |
| 241.09 | 0.727 | 8.62 | -0.0637 | 1.07 | -- | -- | -- | 0.935 | 16.9 | -- | -- | -- | -- |
| 267.34 | 0.765 | 8.65 | -0.348 | -- | 1.24 | -- | -- | 0.709 | -- | 19.2 | 10612 | -- | -- |
| 217.18 | 0.686 | 8.63 | -- | 1.12 | 0.865 | -- | -- | 0.712 | 16.7 | 22.2 | 9637 | -- | -- |
| 301.33 | 0.811 | 8.61 | -0.103 | -- | -- | -- | -- | 0.908 | -- | -- | -- | -- | -- |
| 241.2 | 0.726 | 8.62 | -- | 1.07 | -- | -- | -- | 0.942 | 16.9 | -- | -- | -- | -- |
| 250.39 | 0.737 | 8.65 | -- | -- | 1.44 | -- | -- | 0.717 | -- | 19.02 | 324 | -- | -- |
| 301.61 | 0.811 | 8.61 | -- | -- | -- | -- | -- | 0.919 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 201.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 16 |
| 14 | 204.41 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 24 | 204.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 7 |
| 44 | 205.30 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 54 | 205.60 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 56 | 205.71 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 6 |
| 57 | 205.73 | radiation | 20 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 85 | 206.25 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 92 | 206.52 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 115 | 206.90 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 119 | 206.97 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 125 | 207.01 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 131 | 207.04 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 137 | 207.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 145 | 207.16 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 162 | 207.33 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 169 | 207.37 | temperature | 20 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 181 | 207.45 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 186 | 207.47 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 221 | 207.74 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 223 | 207.76 | humidity | 80 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 224 | 207.77 | temperature | 20 | 14400 | > th | dose independent | sin | 15 | NA |
| 230 | 207.81 | temperature | 20 | 14400 | < th | dose independent | sin | 15 | NA |
| 297 | 208.17 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 301 | 208.17 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 323 | 208.25 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 339 | 208.31 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 347 | 208.35 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 375 | 208.42 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 393 | 208.47 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 394 | 208.48 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 398 | 208.49 | humidity | 80 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 431 | 208.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 440 | 208.70 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 10 |
| 448 | 208.74 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 4 |
| 461 | 208.78 | radiation | 40 | 720 | < th | dose independent | rect. | 13 | 20 |
| 472 | 208.82 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 478 | 208.83 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 479 | 208.83 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 481 | 208.83 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 495 | 208.87 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 497 | 208.87 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 8 |
| 542 | 208.98 | radiation | 40 | 720 | < th | dose independent | sin | 13 | NA |
| 625 | 209.17 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 626 | 209.18 | temperature | 25 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 632 | 209.20 | temperature | 25 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 689 | 209.35 | temperature | 25 | 14400 | > th | dose independent | rect. | 14 | 4 |
| 712 | 209.37 | temperature | 20 | 14400 | > th | dose independent | rect. | 5 | 21 |
| 827 | 209.56 | temperature | 20 | 14400 | < th | dose independent | rect. | 5 | 21 |
| 857 | 209.60 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 862 | 209.60 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 19 |
| 876 | 209.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 15 |
| 877 | 209.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 22 |
| 890 | 209.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 9 |
| 945 | 209.72 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 957 | 209.75 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 962 | 209.75 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 19 |
| 970 | 209.77 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 974 | 209.77 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 15 |