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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0186900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0422) R2 : 0.13
β1 : -0.517 (0.16) R2dD : 0.021 R2D : -0.0146
β2 : -- (--) R2dC : -- R2C : --
β3 : 6.89 (0.875) R2dE : 0.602 R2E : -0.261
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -31 (4.91) R2dD*E : 0.386 R2D*E : -0.479
γ1 : -0.0478 (0.0895) R2dN8 : 0.00057 R2N8 : -0.000736
σ : 0.781
deviance : 280.87
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1004
memory length : 312
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.96
open length of G : 0.208

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
280.08 0.786 2.95 -0.464 0.13 6.36 0.301 -28.3 -0.045 8.69 1004 312 5.97 0.264
302.9 0.811 2.93 -0.321 0.132 2.93 0.122 -- -0.108 5 1005 60 7.45 1.95
279.91 0.779 2.95 -0.487 0.136 6.62 -- -29.9 -0.0504 8.93 1004 308 5.95 0.188
300.13 0.807 2.91 -0.145 0.161 2.35 -- -- -0.0674 6 1006 60 7.45 1.97
280.87 0.781 2.95 -0.517 -- 6.89 -- -31 -0.0478 -- 1004 312 5.96 0.208
316.7 0.834 2.92 -0.174 0.295 -- 0.0241 -- -0.115 8.3 -- -- -- --
316.7 0.833 2.92 -0.174 0.295 -- -- -- -0.115 8.29 -- -- -- --
301.01 0.808 2.92 -0.182 -- 2.3 -- -- -0.0636 -- 1006 49 7.46 2.18
300.38 0.807 2.91 -- 0.168 2.28 -- -- -0.0575 7.88 1006 40 7.4 2.39
321.54 0.838 2.93 -0.172 -- -- -- -- -0.112 -- -- -- -- --
317.5 0.834 2.91 -- 0.295 -- -- -- -0.096 8.33 -- -- -- --
301.86 0.809 2.91 -- -- 2.29 -- -- -0.0454 -- 1006 48 7.37 2.35
322.32 0.838 2.92 -- -- -- -- -- -0.0931 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 286.81 atmosphere 1005 270 < th dose dependent rect. 6 1
2 287.16 atmosphere 1005 30 < th dose dependent rect. 6 4
37 296.52 humidity 70 10 < th dose independent rect. 7 1
97 296.52 humidity 70 10 < th dose dependent rect. 7 1
157 296.65 atmosphere 1000 10 < th dose independent rect. 7 1
164 296.65 atmosphere 1000 10 < th dose dependent rect. 7 1
174 296.70 wind 1 10 < th dose dependent rect. 7 1
176 296.73 wind 1 10 < th dose independent rect. 7 1
192 299.09 atmosphere 1005 90 < th dose dependent rect. 24 1
196 299.64 atmosphere 1005 10 < th dose independent rect. 6 5
197 299.69 humidity 80 90 < th dose independent rect. 23 2
205 299.76 humidity 80 30 < th dose dependent rect. 23 1
210 299.83 atmosphere 1000 10 < th dose independent rect. 1 9
221 299.90 atmosphere 1005 10 < th dose dependent rect. 1 10
246 300.43 temperature 25 90 > th dose dependent rect. 1 1
254 300.60 atmosphere 995 720 < th dose independent rect. 14 1
295 300.60 atmosphere 995 720 < th dose dependent rect. 14 1
340 300.64 temperature 25 10 > th dose independent rect. 1 1
341 300.64 atmosphere 1000 10 < th dose independent rect. 1 1
349 300.64 temperature 25 10 > th dose dependent rect. 1 1
396 301.76 atmosphere 995 720 < th dose independent sin 6 NA
451 302.34 atmosphere 1010 270 > th dose dependent rect. 5 1
472 302.39 atmosphere 1010 270 > th dose independent rect. 5 1
500 302.59 atmosphere 1015 1440 < th dose independent rect. 4 8
501 302.60 atmosphere 1015 1440 < th dose independent rect. 11 1
504 302.60 temperature 25 90 > th dose dependent rect. 24 7
508 302.63 wind 3 90 > th dose independent rect. 24 3
514 302.68 atmosphere 1015 1440 > th dose independent rect. 10 1
520 302.68 atmosphere 1015 1440 < th dose independent rect. 9 3
530 302.68 atmosphere 1015 1440 > th dose dependent rect. 10 1
552 302.73 atmosphere 995 720 < th dose dependent sin 7 NA
580 302.88 atmosphere 1010 90 > th dose dependent rect. 8 1
602 303.03 wind 3 90 > th dose independent rect. 24 1
781 304.00 atmosphere 1005 720 < th dose independent rect. 23 2
826 304.25 atmosphere 995 43200 < th dose dependent rect. 12 15
836 304.32 atmosphere 995 43200 < th dose dependent sin 16 NA
842 304.34 radiation 1 1440 < th dose independent rect. 11 1
843 304.34 radiation 1 1440 < th dose dependent rect. 11 1
846 304.37 atmosphere 995 43200 < th dose dependent rect. 13 13
869 304.58 atmosphere 1015 1440 > th dose dependent sin 2 NA
872 304.59 wind 1 10 > th dose dependent rect. 2 1
885 304.63 atmosphere 995 43200 < th dose dependent rect. 14 9
887 304.66 humidity 60 14400 > th dose independent rect. 3 5
888 304.67 temperature 25 720 > th dose independent rect. 6 1
899 304.69 atmosphere 1015 1440 > th dose dependent rect. 10 8
990 304.84 atmosphere 1005 270 < th dose dependent sin 6 NA
993 304.86 atmosphere 995 43200 < th dose independent rect. 16 22
995 304.86 wind 1 90 > th dose dependent rect. 24 1
999 304.89 wind 3 90 > th dose dependent rect. 24 3