Os07g0186500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0186500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Disease resistance protein family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.7 | 0.501 | 5.87 | 0.532 | 0.373 | -1.92 | 0.461 | 0.129 | 0.172 | 20.5 | 23 | 1066 | -- | -- |
| 113.53 | 0.496 | 5.87 | 0.537 | 0.383 | -2 | 0.442 | -- | 0.182 | 20.5 | 22.68 | 1088 | -- | -- |
| 114.18 | 0.498 | 5.87 | 0.526 | 0.385 | -1.94 | -- | 0.094 | 0.188 | 20.3 | 22.78 | 1087 | -- | -- |
| 114.12 | 0.498 | 5.87 | 0.521 | 0.388 | -2.01 | -- | -- | 0.182 | 20.3 | 22.68 | 1096 | -- | -- |
| 120.16 | 0.511 | 5.85 | 0.578 | -- | -1.88 | -- | 0.154 | 0.209 | -- | 23 | 845 | -- | -- |
| 158.61 | 0.59 | 5.8 | 1.09 | 0.477 | -- | 0.415 | -- | 0.489 | 21.5 | -- | -- | -- | -- |
| 159.24 | 0.591 | 5.8 | 1.07 | 0.476 | -- | -- | -- | 0.489 | 21.4 | -- | -- | -- | -- |
| 119.72 | 0.51 | 5.86 | 0.534 | -- | -2.02 | -- | -- | 0.172 | -- | 22.85 | 816 | -- | -- |
| 119.98 | 0.51 | 5.88 | -- | 0.41 | -2.39 | -- | -- | 0.102 | 20.4 | 22.35 | 1177 | -- | -- |
| 172.53 | 0.614 | 5.79 | 1.07 | -- | -- | -- | -- | 0.487 | -- | -- | -- | -- | -- |
| 189.49 | 0.644 | 5.83 | -- | 0.477 | -- | -- | -- | 0.37 | 21.6 | -- | -- | -- | -- |
| 126.15 | 0.523 | 5.88 | -- | -- | -2.32 | -- | -- | 0.0875 | -- | 22.68 | 859 | -- | -- |
| 202.97 | 0.665 | 5.81 | -- | -- | -- | -- | -- | 0.368 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.86 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 2 | 116.93 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 7 | 117.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 9 | 117.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 12 | 14 |
| 20 | 117.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 26 | 117.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 27 | 117.21 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 32 | 117.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 59 | 117.37 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 72 | 117.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 101 | 117.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 184 | 117.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 10 |
| 207 | 117.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 20 |
| 221 | 117.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 20 |
| 263 | 118.17 | temperature | 25 | 1440 | < th | dose dependent | sin | 2 | NA |
| 422 | 119.05 | temperature | 20 | 1440 | > th | dose independent | sin | 2 | NA |
| 427 | 119.06 | temperature | 20 | 1440 | < th | dose independent | sin | 2 | NA |
| 663 | 119.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 714 | 120.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 749 | 120.12 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 750 | 120.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 751 | 120.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 770 | 120.16 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 823 | 120.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 839 | 120.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 878 | 120.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 887 | 120.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 923 | 120.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 996 | 120.65 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 6 |