Os07g0185800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to C-Myc binding protein (Associate of Myc 1) (AMY-1).
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Os07g0185800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to C-Myc binding protein (Associate of Myc 1) (AMY-1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.38 | 0.333 | 9.5 | -1.26 | 0.995 | -0.9 | -0.136 | -0.962 | -0.237 | 7.69 | 0.9902 | 11542 | -- | -- |
| 51.99 | 0.336 | 9.5 | -1.27 | 0.992 | -0.69 | -0.113 | -- | -0.253 | 7.6 | 1.59 | 11569 | -- | -- |
| 50.43 | 0.331 | 9.5 | -1.26 | 0.995 | -0.899 | -- | -0.958 | -0.238 | 7.69 | 1 | 11542 | -- | -- |
| 51.65 | 0.335 | 9.51 | -1.37 | 0.965 | -0.71 | -- | -- | -0.252 | 7.48 | 1.46 | 11580 | -- | -- |
| 102.65 | 0.474 | 9.5 | -1.22 | -- | -0.372 | -- | 0.196 | -0.0803 | -- | 1 | 11542 | -- | -- |
| 63.77 | 0.374 | 9.48 | -1.22 | 1.01 | -- | -0.126 | -- | -0.0879 | 7.65 | -- | -- | -- | -- |
| 63.82 | 0.374 | 9.48 | -1.22 | 1.01 | -- | -- | -- | -0.0878 | 7.64 | -- | -- | -- | -- |
| 102.9 | 0.475 | 9.5 | -1.21 | -- | -0.371 | -- | -- | -0.0795 | -- | 1 | 11542 | -- | -- |
| 91.34 | 0.445 | 9.48 | -- | 1.07 | -0.623 | -- | -- | -0.0408 | 7.23 | 8.481 | 10669 | -- | -- |
| 118.22 | 0.508 | 9.5 | -1.21 | -- | -- | -- | -- | -0.0728 | -- | -- | -- | -- | -- |
| 103.23 | 0.475 | 9.45 | -- | 0.996 | -- | -- | -- | 0.0484 | 7.73 | -- | -- | -- | -- |
| 141.81 | 0.556 | 9.47 | -- | -- | -0.366 | -- | -- | 0.0554 | -- | 1 | 11542 | -- | -- |
| 156.78 | 0.584 | 9.47 | -- | -- | -- | -- | -- | 0.0613 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.16 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 5 | 49.08 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 6 | 49.08 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 7 | 49.09 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 8 | 49.12 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 13 | 49.20 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 14 | 49.20 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 26 | 49.50 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 34 | 49.66 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 43 | 49.77 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 45 | 49.78 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 50 | 49.83 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 54 | 49.84 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 58 | 49.85 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 69 | 49.97 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 71 | 49.97 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 92 | 50.02 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 96 | 50.03 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 151 | 50.24 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 170 | 50.32 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 18 | 4 |
| 208 | 50.41 | radiation | 1.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 341 | 50.51 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 445 | 50.68 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 455 | 50.69 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 467 | 50.70 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 489 | 50.70 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 522 | 50.74 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 14 | 7 |
| 549 | 50.76 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 19 | NA |
| 589 | 50.80 | radiation | 30.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 632 | 50.85 | radiation | 30.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 737 | 50.94 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 739 | 50.94 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 761 | 50.97 | radiation | 1.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 773 | 50.98 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 798 | 50.99 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 883 | 51.02 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 903 | 51.03 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 922 | 51.03 | radiation | 30.0 | 4320 | < th | dose dependent | rect. | 18 | 10 |
| 938 | 51.05 | radiation | 30.0 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 939 | 51.05 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 8 |
| 975 | 51.09 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 8 | 21 |