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Os07g0185500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.8 (0.0104) R2 : 0.661
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.677 (0.026) R2dC : 0.505 R2C : 0.477
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.303 (0.0219) R2dN8 : 0.184 R2N8 : 0.157
σ : 0.196
deviance : 17.54
__
_____
C
peak time of C : 3.17
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
12.81 0.168 13.8 0.201 0.469 0.452 -0.0669 0.244 0.355 6.04 20.31 40 -- --
13.06 0.168 13.8 0.197 0.464 0.481 -0.119 -- 0.356 6.35 19.67 46 -- --
12.8 0.167 13.8 0.202 0.462 0.451 -- 0.235 0.353 6.03 20 44 -- --
13.08 0.168 13.8 0.198 0.463 0.461 -- -- 0.355 6.08 20.36 46 -- --
16.41 0.189 13.8 0.179 -- 0.624 -- 0.252 0.36 -- 8.267 403 -- --
16.36 0.19 13.8 0.188 0.671 -- 0.308 -- 0.325 3.12 -- -- -- --
16.67 0.191 13.8 0.182 0.674 -- -- -- 0.323 3.17 -- -- -- --
16.65 0.19 13.8 0.187 -- 0.627 -- -- 0.356 -- 8.168 411 -- --
14.11 0.175 13.8 -- 0.467 0.45 -- -- 0.333 6 20 45 -- --
42.48 0.305 13.8 0.211 -- -- -- -- 0.341 -- -- -- -- --
17.54 0.196 13.8 -- 0.677 -- -- -- 0.303 3.17 -- -- -- --
17.51 0.195 13.8 -- -- 0.642 -- -- 0.337 -- 10 411 -- --
43.65 0.308 13.8 -- -- -- -- -- 0.318 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 12.23 radiation 20.0 30 < th dose dependent rect. 2 21
18 12.52 atmosphere 1000.0 10 > th dose independent rect. 2 21
21 12.55 humidity 60.0 10 > th dose dependent rect. 2 21
28 12.60 radiation 40.0 270 < th dose dependent rect. 24 19
34 12.62 radiation 20.0 90 < th dose independent rect. 2 20
41 12.66 radiation 30.0 90 < th dose dependent rect. 2 12
68 12.76 humidity 50.0 90 > th dose dependent rect. 2 12
80 12.79 radiation 10.0 270 < th dose independent rect. 24 19
94 12.83 temperature 20.0 270 > th dose independent rect. 24 21
95 12.83 humidity 50.0 10 > th dose dependent rect. 2 12
96 12.83 radiation 40.0 270 < th dose dependent rect. 24 13
117 12.86 radiation 20.0 30 < th dose dependent rect. 11 23
119 12.87 radiation 20.0 30 < th dose dependent no NA NA
120 12.87 humidity 50.0 270 > th dose dependent rect. 24 11
124 12.87 radiation 20.0 30 < th dose dependent rect. 13 23
125 12.87 radiation 20.0 30 < th dose dependent rect. 15 23
128 12.88 radiation 40.0 270 < th dose independent rect. 24 20
138 12.88 radiation 20.0 30 < th dose dependent rect. 9 23
139 12.89 temperature 20.0 270 > th dose independent rect. 15 14
149 12.90 humidity 60.0 270 > th dose dependent rect. 24 14
153 12.91 atmosphere 1000.0 270 > th dose independent rect. 24 21
172 12.93 humidity 60.0 270 > th dose dependent rect. 24 19
192 12.96 temperature 20.0 1440 < th dose independent rect. 5 1
196 12.96 radiation 20.0 90 < th dose dependent sin 1 NA
241 13.01 radiation 20.0 90 < th dose independent rect. 2 12
267 13.04 wind 1.0 43200 > th dose independent rect. 4 3
278 13.05 wind 1.0 43200 < th dose dependent rect. 4 4
306 13.07 humidity 80.0 10 > th dose independent rect. 2 21
308 13.07 temperature 30.0 270 < th dose dependent rect. 21 3
318 13.08 temperature 20.0 1440 > th dose independent rect. 5 2
369 13.12 temperature 20.0 30 > th dose independent rect. 2 21
460 13.16 radiation 20.0 90 < th dose dependent rect. 7 23
470 13.18 radiation 20.0 270 < th dose independent rect. 24 14
471 13.18 humidity 60.0 90 > th dose dependent rect. 2 9
480 13.19 wind 7.0 270 < th dose independent rect. 21 3
512 13.21 wind 1.0 43200 < th dose independent rect. 4 4
528 13.22 radiation 40.0 10 < th dose independent rect. 2 21
534 13.23 radiation 1.0 90 > th dose independent sin 1 NA
535 13.23 radiation 40.0 270 < th dose independent rect. 10 10
555 13.24 precipitation 0.1 270 < th dose independent rect. 21 3
559 13.24 temperature 25.0 1440 < th dose dependent rect. 2 1
560 13.24 temperature 15.0 1440 > th dose dependent rect. 2 2
563 13.24 precipitation 0.1 270 < th dose dependent rect. 21 3
578 13.25 temperature 10.0 270 > th dose independent rect. 21 3
579 13.25 temperature 30.0 270 < th dose independent rect. 21 3
580 13.25 humidity 50.0 270 > th dose independent rect. 21 3
583 13.25 atmosphere 995.0 270 > th dose independent rect. 21 3
584 13.25 radiation 1.0 270 < th dose independent rect. 21 3
590 13.25 humidity 70.0 270 > th dose independent rect. 24 19
594 13.25 temperature 10.0 270 > th dose independent rect. 24 21
595 13.25 atmosphere 1015.0 270 < th dose independent rect. 24 21
601 13.25 radiation 1.0 270 < th dose dependent rect. 21 3
618 13.26 atmosphere 995.0 270 > th dose independent rect. 15 14
651 13.27 temperature 10.0 720 > th dose dependent rect. 17 11
672 13.28 temperature 30.0 90 < th dose dependent rect. 19 8
694 13.29 temperature 30.0 10 < th dose dependent rect. 23 3
772 13.32 temperature 10.0 720 > th dose dependent rect. 16 13
784 13.33 wind 7.0 10 < th dose independent rect. 23 3
787 13.33 temperature 10.0 10 > th dose independent rect. 23 3
788 13.33 temperature 30.0 10 < th dose independent rect. 23 3
789 13.33 humidity 50.0 10 > th dose independent rect. 23 3
792 13.33 atmosphere 995.0 10 > th dose independent rect. 23 3
793 13.33 radiation 1.0 10 < th dose independent rect. 23 3
798 13.33 precipitation 0.1 10 < th dose independent rect. 23 3
803 13.33 temperature 10.0 10 > th dose independent rect. 2 21
805 13.33 atmosphere 1015.0 10 < th dose independent rect. 2 21
809 13.33 radiation 1.0 10 < th dose dependent rect. 23 3
814 13.33 precipitation 0.1 10 < th dose dependent rect. 23 3
880 13.35 temperature 10.0 1440 > th dose independent rect. 24 3
883 13.35 temperature 30.0 1440 < th dose independent rect. 24 3
887 13.35 humidity 50.0 1440 > th dose independent rect. 24 3
897 13.35 atmosphere 995.0 1440 > th dose independent rect. 24 3
898 13.35 radiation 1.0 1440 < th dose independent rect. 24 3
924 13.35 temperature 10.0 1440 > th dose independent rect. 3 21
931 13.35 radiation 1.0 1440 < th dose dependent rect. 24 3
963 13.36 radiation 40.0 270 < th dose independent rect. 24 11
995 13.37 radiation 40.0 270 < th dose dependent rect. 10 9