Os07g0185100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0185100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 117.41 | 0.509 | 4.15 | 0.353 | 1.02 | 0.424 | -0.0302 | 0.5 | -0.117 | 23 | 61.01 | 1980 | -- | -- |
| 117.73 | 0.505 | 4.14 | 0.379 | 1.03 | 0.498 | -0.0518 | -- | -0.127 | 23.1 | 60.98 | 2034 | -- | -- |
| 117.34 | 0.505 | 4.15 | 0.356 | 1.03 | 0.438 | -- | 0.541 | -0.119 | 23 | 61.16 | 2033 | -- | -- |
| 117.74 | 0.505 | 4.14 | 0.383 | 1.03 | 0.498 | -- | -- | -0.126 | 23.1 | 60.85 | 2034 | -- | -- |
| 178.66 | 0.626 | 4.1 | 0.316 | -- | 0.395 | -- | -0.258 | -0.0383 | -- | 61.16 | 2033 | -- | -- |
| 125.51 | 0.525 | 4.11 | 0.289 | 0.972 | -- | -0.11 | -- | 0.00512 | 23.2 | -- | -- | -- | -- |
| 125.57 | 0.525 | 4.11 | 0.294 | 0.972 | -- | -- | -- | 0.00551 | 23.2 | -- | -- | -- | -- |
| 178.83 | 0.626 | 4.1 | 0.321 | -- | 0.387 | -- | -- | -0.0348 | -- | 61.16 | 2033 | -- | -- |
| 121.26 | 0.513 | 4.15 | -- | 1.03 | 0.431 | -- | -- | -0.159 | 23 | 63 | 2022 | -- | -- |
| 184.67 | 0.635 | 4.09 | 0.318 | -- | -- | -- | -- | 0.0144 | -- | -- | -- | -- | -- |
| 127.84 | 0.529 | 4.12 | -- | 0.975 | -- | -- | -- | -0.0272 | 23.3 | -- | -- | -- | -- |
| 169.09 | 0.608 | 4.1 | -- | -- | 0.457 | -- | -- | -0.0373 | -- | 69.57 | 3092 | -- | -- |
| 187.33 | 0.639 | 4.09 | -- | -- | -- | -- | -- | -0.0208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.19 | wind | 1 | 270 | < th | dose dependent | rect. | 22 | 1 |
| 2 | 117.20 | wind | 1 | 270 | < th | dose independent | rect. | 22 | 1 |
| 6 | 117.84 | wind | 1 | 270 | < th | dose dependent | rect. | 17 | 7 |
| 11 | 117.90 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 12 | 118.00 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 18 |
| 13 | 118.17 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 18 |
| 14 | 118.20 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 15 | 118.21 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 33 | 118.29 | wind | 1 | 30 | < th | dose dependent | rect. | 23 | 3 |
| 37 | 118.39 | wind | 1 | 30 | < th | dose dependent | rect. | 17 | 9 |
| 55 | 118.62 | humidity | 60 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 59 | 118.70 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 64 | 118.75 | humidity | 60 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 66 | 118.78 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 69 | 118.82 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 72 | 118.86 | atmosphere | 1000 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 74 | 118.88 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 77 | 118.90 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 80 | 118.92 | humidity | 70 | 1440 | < th | dose independent | sin | 11 | NA |
| 82 | 118.94 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 86 | 118.95 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 88 | 118.97 | wind | 3 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 107 | 119.03 | humidity | 70 | 1440 | > th | dose independent | sin | 10 | NA |
| 110 | 119.03 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 111 | 119.04 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 112 | 119.05 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 113 | 119.05 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 120 | 119.07 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 130 | 119.11 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 136 | 119.11 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 143 | 119.11 | wind | 7 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 177 | 119.17 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 195 | 119.19 | wind | 7 | 4320 | < th | dose dependent | rect. | 2 | 3 |
| 210 | 119.23 | humidity | 60 | 1440 | > th | dose independent | sin | 22 | NA |
| 214 | 119.23 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 246 | 119.24 | humidity | 60 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 250 | 119.25 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 16 |
| 261 | 119.26 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 299 | 119.29 | temperature | 30 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 304 | 119.30 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 317 | 119.31 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 320 | 119.32 | humidity | 60 | 1440 | > th | dose independent | no | NA | NA |
| 331 | 119.32 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 16 |
| 387 | 119.33 | humidity | 60 | 1440 | < th | dose independent | sin | 22 | NA |
| 407 | 119.33 | humidity | 60 | 1440 | < th | dose independent | rect. | 19 | 22 |
| 421 | 119.34 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 472 | 119.36 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 11 |
| 478 | 119.36 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 15 |
| 483 | 119.36 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 18 |
| 491 | 119.36 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 515 | 119.37 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 19 |
| 527 | 119.38 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 11 |
| 555 | 119.39 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 16 |
| 562 | 119.39 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 569 | 119.39 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 7 |
| 590 | 119.40 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 593 | 119.40 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 17 |
| 594 | 119.40 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 19 |
| 597 | 119.40 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 639 | 119.42 | humidity | 60 | 1440 | < th | dose independent | no | NA | NA |
| 785 | 119.43 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 21 |
| 786 | 119.43 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 21 |
| 790 | 119.43 | temperature | 30 | 4320 | > th | dose dependent | sin | 2 | NA |
| 814 | 119.44 | temperature | 30 | 4320 | > th | dose dependent | sin | 0 | NA |
| 842 | 119.45 | temperature | 30 | 4320 | > th | dose dependent | sin | 22 | NA |
| 844 | 119.45 | wind | 1 | 4320 | > th | dose dependent | rect. | 2 | 3 |
| 899 | 119.46 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |