Os07g0184600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os07g0184600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138.68 | 0.553 | 8.66 | 0.692 | 0.545 | 2.55 | 0.946 | -1.03 | 0.267 | 0.0228 | 30.97 | 4380 | -- | -- |
| 138.88 | 0.549 | 8.67 | 0.59 | 0.522 | 2.74 | 0.927 | -- | 0.323 | 23.9 | 26.78 | 4477 | -- | -- |
| 142.54 | 0.556 | 8.66 | 0.679 | 0.548 | 2.55 | -- | -1.1 | 0.264 | 23.8 | 31.13 | 4392 | -- | -- |
| 142.54 | 0.556 | 8.68 | 0.552 | 0.523 | 2.74 | -- | -- | 0.315 | 23.8 | 26.8 | 4467 | -- | -- |
| 159.46 | 0.588 | 8.68 | 0.613 | -- | 2.65 | -- | -0.322 | 0.319 | -- | 26.9 | 4561 | -- | -- |
| 262 | 0.759 | 8.83 | -0.774 | 0.474 | -- | 0.869 | -- | -0.348 | 23.7 | -- | -- | -- | -- |
| 265.17 | 0.763 | 8.83 | -0.807 | 0.473 | -- | -- | -- | -0.351 | 23.3 | -- | -- | -- | -- |
| 159.19 | 0.588 | 8.67 | 0.547 | -- | 2.72 | -- | -- | 0.313 | -- | 26.7 | 4547 | -- | -- |
| 146.62 | 0.564 | 8.7 | -- | 0.656 | 2.46 | -- | -- | 0.222 | 23.5 | 27.1 | 3726 | -- | -- |
| 279.16 | 0.781 | 8.82 | -0.795 | -- | -- | -- | -- | -0.346 | -- | -- | -- | -- | -- |
| 282.35 | 0.786 | 8.81 | -- | 0.465 | -- | -- | -- | -0.261 | 23.2 | -- | -- | -- | -- |
| 165.17 | 0.599 | 8.67 | -- | -- | 2.4 | -- | -- | 0.262 | -- | 27.22 | 4514 | -- | -- |
| 295.85 | 0.803 | 8.8 | -- | -- | -- | -- | -- | -0.258 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 131.43 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 7 |
| 2 | 131.51 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 4 | 131.58 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 3 |
| 9 | 131.66 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 3 |
| 17 | 131.77 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 11 |
| 20 | 131.79 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 11 |
| 37 | 131.92 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 50 | 132.05 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 65 | 132.17 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 156 | 132.83 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 165 | 132.88 | temperature | 30 | 4320 | < th | dose dependent | sin | 11 | NA |
| 173 | 132.92 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 179 | 132.97 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 475 | 135.04 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 985 | 138.88 | temperature | 30 | 4320 | < th | dose dependent | no | NA | NA |