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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0183300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0308) R2 : 0.0113
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.148 (0.0649) R2dN8 : 0.0146 R2N8 : 0.0113
σ : 0.581
deviance : 154.73
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
139.99 0.556 3 -0.121 0.166 2.36 -0.679 7.13 0.124 7.19 6.738 828 -- --
146.4 0.564 2.94 -0.0185 0.275 0.993 -1.1 -- 0.208 6.95 5.403 838 -- --
141.18 0.553 3 -0.136 0.164 2.37 -- 7.41 0.121 7.31 6.686 827 -- --
146.25 0.563 2.94 -0.248 0.158 0.782 -- -- 0.142 7 6.003 841 -- --
142.56 0.556 3.01 -0.139 -- 2.37 -- 7.63 0.124 -- 6.8 827 -- --
149.05 0.572 2.95 -0.364 0.124 -- -0.69 -- 0.103 6.84 -- -- -- --
150.1 0.574 2.95 -0.378 0.135 -- -- -- 0.103 5.33 -- -- -- --
147.55 0.566 2.94 -0.262 -- 0.743 -- -- 0.152 -- 6.365 841 -- --
147.74 0.566 2.93 -- 0.169 0.924 -- -- 0.174 6.95 6 841 -- --
151.05 0.574 2.95 -0.373 -- -- -- -- 0.107 -- -- -- -- --
153.87 0.58 2.94 -- 0.128 -- -- -- 0.146 5.45 -- -- -- --
149.14 0.569 2.94 -- -- 0.862 -- -- 0.18 -- 6.3 893 -- --
154.73 0.581 2.94 -- -- -- -- -- 0.148 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 135.69 wind 9.0 720 > th dose dependent rect. 12 1
2 136.05 wind 9.0 720 > th dose independent rect. 12 1
14 137.81 radiation 1.0 14400 < th dose dependent rect. 3 1
15 137.86 wind 9.0 720 > th dose independent rect. 12 4
17 137.96 wind 9.0 30 < th dose independent rect. 3 23
19 138.14 atmosphere 995.0 30 > th dose independent rect. 3 23
23 138.28 temperature 20.0 10 > th dose independent rect. 2 1
25 138.36 temperature 20.0 10 > th dose dependent rect. 2 1
26 138.38 atmosphere 1005.0 10 > th dose independent rect. 2 1
27 138.39 wind 1.0 10 < th dose independent rect. 2 1
30 138.41 precipitation 0.1 30 < th dose independent rect. 3 23
31 138.41 precipitation 0.1 30 < th dose dependent rect. 3 23
35 138.44 atmosphere 995.0 720 > th dose independent rect. 15 16
38 138.48 humidity 80.0 30 > th dose independent rect. 2 1
48 138.51 atmosphere 1000.0 30 > th dose dependent rect. 2 1
51 138.52 wind 9.0 1440 < th dose independent rect. 3 1
52 138.52 temperature 10.0 1440 > th dose independent rect. 3 1
55 138.52 temperature 30.0 1440 < th dose independent rect. 3 1
59 138.52 humidity 50.0 1440 > th dose independent rect. 3 1
68 138.52 atmosphere 995.0 1440 > th dose independent rect. 3 1
69 138.52 radiation 1.0 1440 < th dose independent rect. 3 1
89 138.52 temperature 10.0 1440 > th dose independent rect. 4 23
92 138.52 wind 3.0 30 < th dose dependent rect. 2 1
95 138.52 radiation 1.0 1440 < th dose dependent rect. 3 1
106 138.54 wind 9.0 30 < th dose independent rect. 2 1
107 138.54 temperature 10.0 30 > th dose independent rect. 2 1
109 138.54 temperature 25.0 30 < th dose independent rect. 2 1
111 138.54 humidity 50.0 30 > th dose independent rect. 2 1
114 138.54 atmosphere 995.0 30 > th dose independent rect. 2 1
115 138.54 atmosphere 1010.0 30 < th dose independent rect. 2 1
117 138.54 radiation 1.0 30 < th dose independent rect. 2 1
122 138.54 precipitation 0.1 30 < th dose independent rect. 2 1
123 138.54 atmosphere 995.0 720 > th dose independent rect. 7 8
124 138.54 temperature 10.0 30 > th dose independent rect. 3 23
126 138.54 radiation 1.0 30 < th dose dependent rect. 2 1
131 138.54 precipitation 0.1 30 < th dose dependent rect. 2 1
134 138.55 wind 9.0 1440 < th dose independent rect. 11 3
135 138.55 atmosphere 995.0 720 > th dose independent rect. 3 16
137 138.56 humidity 50.0 30 > th dose dependent rect. 2 1
147 138.59 temperature 10.0 720 > th dose independent rect. 7 8
148 138.59 atmosphere 1015.0 720 < th dose independent rect. 7 8
149 138.59 temperature 10.0 720 > th dose independent rect. 15 16
151 138.60 atmosphere 1015.0 30 < th dose dependent rect. 2 1
166 138.72 temperature 30.0 30 < th dose dependent rect. 2 1
170 138.76 temperature 10.0 720 > th dose independent rect. 19 8
171 138.76 temperature 30.0 720 < th dose independent rect. 19 8
172 138.76 humidity 50.0 720 > th dose independent rect. 19 8
173 138.76 atmosphere 995.0 720 > th dose independent rect. 19 8
174 138.76 radiation 1.0 720 < th dose independent rect. 19 8
179 138.76 temperature 10.0 720 > th dose independent rect. 3 16
180 138.76 radiation 1.0 720 < th dose dependent rect. 19 8
216 138.83 wind 1.0 30 > th dose independent rect. 2 1
227 139.04 wind 9.0 1440 < th dose independent rect. 13 1
230 139.09 wind 9.0 1440 < th dose independent rect. 4 10
231 139.09 wind 7.0 720 > th dose dependent rect. 19 1
242 139.34 wind 9.0 1440 < th dose independent rect. 1 13
250 139.43 wind 9.0 1440 < th dose independent rect. 23 15
257 139.51 precipitation 0.1 720 < th dose independent rect. 19 8
258 139.51 precipitation 0.1 720 < th dose dependent rect. 19 8
271 139.74 precipitation 0.1 720 < th dose independent rect. 15 16
272 139.74 precipitation 0.1 720 < th dose dependent rect. 15 16
282 139.99 wind 9.0 1440 < th dose independent rect. 18 20
283 140.00 wind 7.0 30 > th dose independent rect. 21 5
284 140.00 wind 7.0 30 > th dose dependent rect. 21 5
333 140.05 atmosphere 1010.0 10 < th dose independent rect. 3 23
334 140.06 wind 9.0 30 > th dose dependent rect. 18 8
350 140.11 wind 9.0 90 > th dose independent rect. 18 8
384 140.21 wind 9.0 720 > th dose independent rect. 15 1
397 140.25 wind 7.0 720 > th dose independent rect. 15 23
404 140.28 wind 9.0 720 < th dose independent rect. 17 8
426 140.31 wind 9.0 90 > th dose independent rect. 18 4
442 140.34 precipitation 0.1 720 < th dose independent rect. 7 8
448 140.34 precipitation 0.1 720 < th dose dependent rect. 7 8
453 140.37 wind 9.0 30 > th dose dependent rect. 18 4
478 140.39 wind 9.0 1440 < th dose independent rect. 18 23
481 140.40 wind 7.0 720 > th dose independent rect. 19 1
507 140.44 wind 7.0 90 > th dose independent rect. 21 1
513 140.46 wind 7.0 720 > th dose independent rect. 11 11
515 140.46 wind 7.0 720 > th dose dependent rect. 15 2
526 140.47 wind 7.0 90 > th dose dependent rect. 21 1
528 140.47 wind 7.0 720 > th dose dependent rect. 18 23
551 140.49 wind 7.0 720 > th dose dependent rect. 18 20
573 140.54 wind 9.0 1440 < th dose independent sin 4 NA
615 140.63 wind 9.0 1440 > th dose independent rect. 18 20
620 140.64 wind 9.0 1440 > th dose independent rect. 18 22
669 140.71 wind 7.0 720 > th dose dependent rect. 15 23
840 141.08 wind 9.0 1440 > th dose independent sin 3 NA
845 141.09 wind 1.0 10 < th dose independent rect. 5 22
846 141.10 wind 7.0 720 > th dose independent sin 20 NA
861 141.12 humidity 50.0 30 > th dose independent rect. 3 23
922 141.17 wind 9.0 30 < th dose independent sin 10 NA
923 141.17 wind 9.0 720 < th dose independent rect. 19 8
962 141.22 wind 7.0 720 < th dose independent rect. 3 23
994 141.27 wind 7.0 1440 > th dose dependent sin 3 NA