Os07g0181000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pyruvate kinase isozyme A, chloroplast precursor (EC 2.7.1.40).
FiT-DB / Search/ Help/ Sample detail
|
Os07g0181000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Pyruvate kinase isozyme A, chloroplast precursor (EC 2.7.1.40).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.5 | 0.359 | 12.4 | 0.243 | 2.72 | 1.28 | 0.164 | 0.603 | -0.139 | 19.2 | 1.343 | 345 | -- | -- |
| 59.02 | 0.358 | 12.4 | 0.246 | 2.69 | 1.29 | 0.169 | -- | -0.135 | 19.2 | 0.4158 | 362 | -- | -- |
| 58.43 | 0.356 | 12.4 | 0.24 | 2.69 | 1.32 | -- | 0.612 | -0.144 | 19.2 | 0.06033 | 355 | -- | -- |
| 59.11 | 0.358 | 12.4 | 0.225 | 2.67 | 1.32 | -- | -- | -0.147 | 19.2 | 0.18 | 365 | -- | -- |
| 168.21 | 0.604 | 12.4 | 0.083 | -- | 3.49 | -- | -0.133 | -0.429 | -- | -110.3 | 720 | -- | -- |
| 78.37 | 0.415 | 12.3 | 0.3 | 3.22 | -- | 0.532 | -- | -0.0367 | 18.3 | -- | -- | -- | -- |
| 79.07 | 0.416 | 12.3 | 0.294 | 3.22 | -- | -- | -- | -0.035 | 18.3 | -- | -- | -- | -- |
| 168.13 | 0.604 | 12.4 | 0.0304 | -- | 3.52 | -- | -- | -0.442 | -- | -81.9 | 729 | -- | -- |
| 60.4 | 0.362 | 12.4 | -- | 2.64 | 1.35 | -- | -- | -0.174 | 19.2 | -0.07691 | 376 | -- | -- |
| 617.05 | 1.16 | 12.3 | 0.208 | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
| 81.34 | 0.422 | 12.3 | -- | 3.22 | -- | -- | -- | -0.0677 | 18.3 | -- | -- | -- | -- |
| 168.15 | 0.604 | 12.4 | -- | -- | 3.52 | -- | -- | -0.446 | -- | -47.89 | 729 | -- | -- |
| 618.19 | 1.16 | 12.3 | -- | -- | -- | -- | -- | -0.128 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.09 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 9 | 58.73 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 22 |
| 14 | 58.87 | humidity | 70 | 270 | > th | dose independent | rect. | 4 | 17 |
| 17 | 58.94 | radiation | 30 | 270 | < th | dose dependent | rect. | 5 | 17 |
| 18 | 59.02 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 11 |
| 27 | 59.26 | radiation | 30 | 270 | < th | dose dependent | rect. | 4 | 19 |
| 30 | 59.28 | radiation | 20 | 270 | < th | dose independent | rect. | 5 | 17 |
| 31 | 59.29 | radiation | 1 | 270 | > th | dose dependent | rect. | 8 | 11 |
| 44 | 59.32 | radiation | 40 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 46 | 59.34 | radiation | 20 | 270 | < th | dose independent | rect. | 4 | 19 |
| 51 | 59.38 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 74 | 59.54 | humidity | 60 | 270 | > th | dose dependent | rect. | 4 | 18 |
| 77 | 59.60 | humidity | 60 | 270 | > th | dose dependent | rect. | 5 | 16 |
| 89 | 59.76 | radiation | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 112 | 59.96 | radiation | 20 | 270 | < th | dose independent | rect. | 4 | 12 |
| 140 | 60.06 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 212 | 60.22 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 23 |
| 215 | 60.23 | radiation | 1 | 270 | > th | dose dependent | sin | 23 | NA |
| 221 | 60.27 | radiation | 40 | 270 | < th | dose dependent | no | NA | NA |
| 230 | 60.34 | radiation | 40 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 237 | 60.41 | radiation | 1 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 263 | 60.54 | humidity | 70 | 270 | > th | dose independent | rect. | 4 | 11 |
| 284 | 60.64 | radiation | 20 | 270 | < th | dose independent | rect. | 13 | 21 |
| 300 | 60.77 | radiation | 10 | 270 | > th | dose independent | rect. | 8 | 10 |
| 319 | 60.82 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 9 |
| 322 | 60.84 | radiation | 40 | 270 | < th | dose independent | rect. | 4 | 11 |
| 329 | 60.88 | humidity | 70 | 270 | > th | dose independent | sin | 0 | NA |
| 532 | 61.22 | radiation | 20 | 270 | > th | dose independent | no | NA | NA |
| 635 | 61.26 | radiation | 20 | 270 | > th | dose independent | sin | 23 | NA |
| 663 | 61.43 | radiation | 20 | 270 | < th | dose independent | sin | 23 | NA |
| 670 | 61.45 | humidity | 70 | 270 | > th | dose independent | rect. | 13 | 22 |
| 690 | 61.55 | radiation | 20 | 270 | > th | dose independent | rect. | 14 | 23 |
| 691 | 61.55 | radiation | 20 | 270 | < th | dose independent | rect. | 17 | 23 |
| 714 | 61.63 | humidity | 80 | 270 | < th | dose independent | rect. | 8 | 10 |
| 719 | 61.65 | radiation | 20 | 270 | < th | dose independent | no | NA | NA |
| 850 | 61.99 | humidity | 70 | 270 | > th | dose independent | rect. | 16 | 23 |
| 924 | 62.23 | humidity | 60 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 929 | 62.25 | humidity | 70 | 270 | > th | dose independent | no | NA | NA |
| 953 | 62.37 | humidity | 60 | 270 | > th | dose dependent | sin | 23 | NA |
| 995 | 62.51 | radiation | 30 | 270 | < th | dose dependent | rect. | 17 | 17 |