Os07g0180000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os07g0180000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 476.41 | 1.03 | 3.61 | 0.526 | 0.745 | 0.688 | 1.77 | 6.39 | -0.32 | 19 | 93.77 | 218 | -- | -- |
| 496.33 | 1.04 | 3.63 | 0.583 | 0.686 | 0.941 | 0.724 | -- | -0.245 | 20 | 93.67 | 730 | -- | -- |
| 482.35 | 1.02 | 3.62 | 0.51 | 0.721 | 0.918 | -- | 5.93 | -0.317 | 18.7 | 94.3 | 226 | -- | -- |
| 495.05 | 1.04 | 3.63 | 0.594 | 0.657 | 1.09 | -- | -- | -0.295 | 19.4 | 94.77 | 528 | -- | -- |
| 504.26 | 1.05 | 3.61 | 0.527 | -- | -0.0217 | -- | 5.02 | -0.379 | -- | 94.12 | 214 | -- | -- |
| 505.3 | 1.05 | 3.64 | 0.583 | 0.529 | -- | 0.194 | -- | -0.359 | 19.2 | -- | -- | -- | -- |
| 505.35 | 1.05 | 3.64 | 0.58 | 0.533 | -- | -- | -- | -0.358 | 19 | -- | -- | -- | -- |
| 511.56 | 1.05 | 3.63 | 0.583 | -- | 1.16 | -- | -- | -0.366 | -- | 95.89 | 478 | -- | -- |
| 504.16 | 1.05 | 3.64 | -- | 0.65 | 1.05 | -- | -- | -0.354 | 19.4 | 94.79 | 478 | -- | -- |
| 520.27 | 1.07 | 3.63 | 0.569 | -- | -- | -- | -- | -0.368 | -- | -- | -- | -- | -- |
| 514.2 | 1.06 | 3.65 | -- | 0.526 | -- | -- | -- | -0.423 | 19.1 | -- | -- | -- | -- |
| 520.88 | 1.06 | 3.64 | -- | -- | 1.47 | -- | -- | -0.406 | -- | 95.92 | 348 | -- | -- |
| 528.81 | 1.07 | 3.64 | -- | -- | -- | -- | -- | -0.431 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 475.20 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 6 |
| 3 | 477.49 | humidity | 90 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 7 | 478.01 | humidity | 90 | 270 | > th | dose dependent | sin | 7 | NA |
| 15 | 478.81 | radiation | 1 | 90 | < th | dose independent | rect. | 8 | 3 |
| 16 | 478.81 | radiation | 1 | 90 | < th | dose dependent | rect. | 8 | 3 |
| 17 | 478.99 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 4 | 3 |
| 20 | 479.03 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 4 | 1 |
| 23 | 479.03 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 30 | 479.10 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 10 |
| 48 | 479.28 | wind | 1 | 90 | < th | dose dependent | rect. | 1 | 9 |
| 56 | 479.63 | humidity | 90 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 93 | 480.35 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 102 | 480.59 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 109 | 480.87 | humidity | 90 | 90 | > th | dose independent | rect. | 5 | 2 |
| 113 | 480.95 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 14 |
| 121 | 481.01 | humidity | 90 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 135 | 481.18 | humidity | 90 | 270 | > th | dose independent | rect. | 2 | 5 |
| 165 | 481.56 | humidity | 80 | 720 | > th | dose independent | rect. | 22 | 8 |
| 166 | 481.61 | humidity | 90 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 169 | 481.68 | humidity | 80 | 720 | < th | dose independent | rect. | 23 | 3 |
| 174 | 481.79 | wind | 1 | 90 | < th | dose dependent | sin | 3 | NA |
| 175 | 481.82 | wind | 1 | 90 | < th | dose dependent | rect. | 1 | 13 |
| 178 | 481.87 | humidity | 90 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 194 | 482.05 | humidity | 90 | 270 | > th | dose dependent | rect. | 13 | 19 |
| 200 | 482.13 | humidity | 80 | 720 | < th | dose independent | rect. | 23 | 1 |
| 228 | 482.45 | humidity | 80 | 720 | < th | dose dependent | rect. | 23 | 1 |
| 230 | 482.48 | wind | 3 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 250 | 482.64 | humidity | 90 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 252 | 482.67 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 260 | 482.75 | humidity | 80 | 720 | < th | dose dependent | rect. | 23 | 3 |
| 279 | 482.91 | humidity | 90 | 90 | > th | dose independent | sin | 5 | NA |
| 302 | 483.04 | wind | 1 | 90 | < th | dose dependent | rect. | 1 | 17 |
| 317 | 483.12 | wind | 1 | 1440 | > th | dose independent | rect. | 13 | 9 |
| 318 | 483.15 | wind | 1 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 326 | 483.25 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 368 | 483.54 | wind | 1 | 90 | < th | dose independent | rect. | 3 | 7 |
| 369 | 483.54 | humidity | 90 | 270 | > th | dose dependent | no | NA | NA |
| 379 | 483.59 | wind | 1 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 387 | 483.61 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 392 | 483.64 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 430 | 483.84 | wind | 1 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 445 | 483.96 | wind | 7 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 456 | 484.05 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 9 | 2 |
| 469 | 484.19 | radiation | 10 | 270 | < th | dose independent | sin | 6 | NA |
| 493 | 484.41 | wind | 7 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 505 | 484.51 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 8 | 4 |
| 517 | 484.62 | wind | 3 | 270 | < th | dose independent | rect. | 23 | 7 |
| 518 | 484.62 | humidity | 50 | 270 | > th | dose dependent | sin | 9 | NA |
| 573 | 485.01 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 580 | 485.04 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 583 | 485.07 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 589 | 485.10 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 18 |
| 606 | 485.16 | wind | 1 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 614 | 485.21 | humidity | 90 | 90 | < th | dose independent | sin | 5 | NA |
| 615 | 485.21 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 14 |
| 620 | 485.24 | wind | 1 | 90 | < th | dose independent | rect. | 1 | 9 |
| 626 | 485.25 | humidity | 60 | 30 | > th | dose independent | rect. | 12 | 20 |
| 633 | 485.27 | humidity | 90 | 90 | < th | dose independent | rect. | 23 | 13 |
| 637 | 485.31 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 19 |
| 647 | 485.37 | humidity | 60 | 90 | > th | dose independent | rect. | 11 | 22 |
| 654 | 485.43 | humidity | 90 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 664 | 485.49 | humidity | 90 | 90 | > th | dose independent | rect. | 2 | 15 |
| 669 | 485.52 | humidity | 90 | 90 | < th | dose independent | rect. | 2 | 10 |
| 682 | 485.60 | radiation | 20 | 10 | < th | dose independent | rect. | 20 | 17 |
| 688 | 485.65 | radiation | 10 | 720 | < th | dose independent | rect. | 19 | 19 |
| 743 | 485.86 | wind | 7 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 744 | 485.87 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 11 |
| 750 | 485.88 | radiation | 10 | 720 | < th | dose independent | rect. | 3 | 20 |
| 752 | 485.88 | humidity | 80 | 720 | < th | dose dependent | rect. | 22 | 5 |
| 803 | 486.04 | wind | 7 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 811 | 486.06 | radiation | 1 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 814 | 486.08 | radiation | 1 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 831 | 486.16 | radiation | 10 | 270 | < th | dose dependent | sin | 6 | NA |
| 832 | 486.16 | humidity | 90 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 851 | 486.26 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 9 | 22 |
| 852 | 486.26 | humidity | 90 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 896 | 486.47 | wind | 5 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 909 | 486.55 | radiation | 10 | 270 | < th | dose independent | rect. | 19 | 23 |
| 910 | 486.56 | atmosphere | 1000 | 720 | > th | dose independent | sin | 10 | NA |
| 930 | 486.63 | radiation | 20 | 10 | < th | dose independent | rect. | 20 | 19 |
| 967 | 486.73 | humidity | 90 | 10 | < th | dose independent | rect. | 22 | 14 |
| 978 | 486.76 | humidity | 90 | 90 | > th | dose dependent | rect. | 5 | 6 |