Os07g0179400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytidyltransferase-related domain containing protein.
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Os07g0179400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytidyltransferase-related domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.83 | 0.269 | 10.4 | 0.658 | 1.23 | 0.721 | -0.295 | 0.229 | 0.106 | 23.9 | 28.4 | 4563 | -- | -- |
| 32.82 | 0.267 | 10.4 | 0.724 | 1.23 | 0.746 | -0.297 | -- | 0.123 | 23.9 | 28.27 | 4563 | -- | -- |
| 33.21 | 0.268 | 10.4 | 0.66 | 1.23 | 0.721 | -- | 0.255 | 0.107 | 23.9 | 28.4 | 4562 | -- | -- |
| 33.21 | 0.268 | 10.4 | 0.738 | 1.23 | 0.747 | -- | -- | 0.127 | 23.9 | 28.26 | 4563 | -- | -- |
| 99.65 | 0.467 | 10.3 | 0.762 | -- | 0.762 | -- | -0.257 | 0.182 | -- | 27.6 | 4596 | -- | -- |
| 51.81 | 0.337 | 10.4 | 0.476 | 1.21 | -- | -0.361 | -- | 0.0583 | 23.9 | -- | -- | -- | -- |
| 52.37 | 0.339 | 10.4 | 0.491 | 1.21 | -- | -- | -- | 0.0598 | 23.9 | -- | -- | -- | -- |
| 99.77 | 0.467 | 10.3 | 0.715 | -- | 0.748 | -- | -- | 0.169 | -- | 27.6 | 4596 | -- | -- |
| 46.32 | 0.317 | 10.4 | -- | 1.26 | 0.544 | -- | -- | 0.0694 | 24 | 28.8 | 5763 | -- | -- |
| 144.71 | 0.562 | 10.3 | 0.527 | -- | -- | -- | -- | 0.076 | -- | -- | -- | -- | -- |
| 58.71 | 0.358 | 10.4 | -- | 1.22 | -- | -- | -- | 0.00514 | 23.9 | -- | -- | -- | -- |
| 112.99 | 0.497 | 10.3 | -- | -- | 0.69 | -- | -- | 0.0841 | -- | 27.6 | 4596 | -- | -- |
| 152.05 | 0.576 | 10.4 | -- | -- | -- | -- | -- | 0.0175 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.17 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 3 | 31.32 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 4 | 31.33 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 7 | 31.40 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 19 | 4 |
| 19 | 31.56 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 20 | 31.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 4 |
| 22 | 31.57 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 24 | 31.59 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 29 | 31.61 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 30 | 31.61 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 58 | 31.82 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 132 | 32.13 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 141 | 32.14 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 142 | 32.15 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 20 |
| 162 | 32.20 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 20 |
| 172 | 32.22 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 190 | 32.25 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 194 | 32.26 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 202 | 32.27 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 208 | 32.28 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 210 | 32.28 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 236 | 32.32 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 264 | 32.34 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 14 |
| 276 | 32.35 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 286 | 32.36 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 335 | 32.43 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 372 | 32.47 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 383 | 32.48 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 384 | 32.48 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 13 | 6 |
| 399 | 32.48 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 428 | 32.49 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 452 | 32.51 | temperature | 25.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 496 | 32.53 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 500 | 32.53 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 1 | 4 |
| 535 | 32.54 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 541 | 32.55 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 571 | 32.56 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 672 | 32.62 | temperature | 25.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 692 | 32.62 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 6 | 16 |
| 803 | 32.67 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 848 | 32.68 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 867 | 32.69 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 891 | 32.70 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 9 |