Os07g0179000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0179000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein prenyltransferase domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.9 | 0.415 | 6.7 | 1.63 | 0.863 | -0.907 | -0.846 | -0.344 | 0.2 | 18.2 | 1.03 | 4300 | -- | -- |
| 78.05 | 0.411 | 6.7 | 1.7 | 0.866 | -0.875 | -0.858 | -- | 0.204 | 18.3 | 1.023 | 4291 | -- | -- |
| 79.31 | 0.415 | 6.7 | 1.62 | 0.859 | -0.892 | -- | -0.299 | 0.2 | 18.1 | 1.181 | 4303 | -- | -- |
| 79.43 | 0.415 | 6.7 | 1.69 | 0.859 | -0.856 | -- | -- | 0.202 | 18 | 1.232 | 4307 | -- | -- |
| 117.42 | 0.505 | 6.7 | 1.61 | -- | -0.885 | -- | -0.266 | 0.177 | -- | 1.18 | 4320 | -- | -- |
| 94.83 | 0.457 | 6.74 | 1.47 | 0.873 | -- | -0.745 | -- | 0.0239 | 18 | -- | -- | -- | -- |
| 96.1 | 0.459 | 6.74 | 1.48 | 0.871 | -- | -- | -- | 0.0217 | 17.9 | -- | -- | -- | -- |
| 117.55 | 0.505 | 6.7 | 1.66 | -- | -0.876 | -- | -- | 0.173 | -- | 1.23 | 4328 | -- | -- |
| 135.13 | 0.541 | 6.72 | -- | 0.839 | -0.875 | -- | -- | 0.0936 | 18 | 7.96 | 8650 | -- | -- |
| 135.39 | 0.544 | 6.72 | 1.45 | -- | -- | -- | -- | 0.00144 | -- | -- | -- | -- | -- |
| 153.7 | 0.58 | 6.77 | -- | 0.848 | -- | -- | -- | -0.143 | 17.9 | -- | -- | -- | -- |
| 171.37 | 0.61 | 6.72 | -- | -- | -0.902 | -- | -- | 0.0704 | -- | 7.959 | 8630 | -- | -- |
| 191 | 0.645 | 6.76 | -- | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.08 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 16 | 73.15 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 18 | 73.36 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 20 | 73.48 | radiation | 40 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 23 | 73.63 | radiation | 40 | 4320 | < th | dose independent | rect. | 1 | 8 |
| 24 | 73.65 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 30 | 73.65 | radiation | 40 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 39 | 73.76 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 40 | 73.76 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 42 | 73.87 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 44 | 73.91 | radiation | 40 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 45 | 73.91 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 46 | 73.93 | radiation | 40 | 4320 | < th | dose independent | rect. | 16 | 17 |
| 49 | 73.95 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 17 |
| 53 | 74.00 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 14 |
| 56 | 74.05 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 58 | 74.06 | wind | 1 | 43200 | > th | dose dependent | rect. | 2 | 12 |
| 62 | 74.11 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 64 | 74.14 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 66 | 74.15 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 67 | 74.16 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 75 | 74.20 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 14 |
| 81 | 74.23 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 82 | 74.23 | wind | 1 | 43200 | > th | dose dependent | rect. | 8 | 5 |
| 83 | 74.23 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 11 |
| 85 | 74.24 | wind | 1 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 88 | 74.25 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 99 | 74.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 109 | 74.32 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 17 |
| 122 | 74.35 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 124 | 74.36 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 134 | 74.39 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 8 |
| 138 | 74.40 | wind | 7 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 146 | 74.43 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 152 | 74.46 | wind | 9 | 43200 | < th | dose dependent | rect. | 7 | 6 |
| 176 | 74.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 182 | 74.52 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 191 | 74.56 | wind | 3 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 197 | 74.58 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 202 | 74.59 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 203 | 74.59 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 204 | 74.59 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 210 | 74.60 | wind | 7 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 211 | 74.60 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 217 | 74.61 | wind | 1 | 43200 | > th | dose dependent | sin | 5 | NA |
| 218 | 74.61 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 241 | 74.66 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 245 | 74.67 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 255 | 74.68 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 266 | 74.71 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 293 | 74.77 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 302 | 74.78 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 312 | 74.79 | wind | 9 | 43200 | < th | dose dependent | sin | 5 | NA |
| 360 | 74.85 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 386 | 74.89 | humidity | 80 | 43200 | > th | dose dependent | rect. | 6 | 10 |
| 396 | 74.90 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 17 |
| 401 | 74.91 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 14 |
| 413 | 74.92 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 415 | 74.92 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 4 |
| 428 | 74.95 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 432 | 74.95 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 14 |
| 454 | 74.98 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 462 | 74.99 | humidity | 80 | 43200 | > th | dose dependent | rect. | 7 | 4 |
| 482 | 75.02 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 11 |
| 497 | 75.04 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 11 |
| 503 | 75.05 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 5 |
| 515 | 75.06 | wind | 3 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 566 | 75.10 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 575 | 75.11 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 626 | 75.15 | humidity | 90 | 43200 | < th | dose independent | sin | 0 | NA |
| 661 | 75.18 | wind | 3 | 43200 | < th | dose independent | rect. | 24 | 5 |
| 691 | 75.20 | radiation | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 704 | 75.21 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 708 | 75.21 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 719 | 75.22 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 17 |
| 753 | 75.25 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 10 |
| 762 | 75.26 | humidity | 90 | 43200 | > th | dose independent | sin | 0 | NA |
| 768 | 75.26 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 770 | 75.26 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 789 | 75.27 | wind | 7 | 43200 | < th | dose independent | sin | 6 | NA |
| 803 | 75.28 | wind | 7 | 43200 | > th | dose independent | sin | 6 | NA |
| 829 | 75.29 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 836 | 75.29 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 10 |
| 880 | 75.33 | radiation | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 922 | 75.34 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 18 |
| 935 | 75.36 | wind | 5 | 43200 | < th | dose independent | sin | 4 | NA |
| 940 | 75.36 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 10 |