Os07g0176400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, plant specific containing protein.
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Os07g0176400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, plant specific containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 157.66 | 0.59 | 5.49 | 2.51 | 0.508 | 1.94 | 0.696 | -6.08 | 0.182 | 9.04 | 24.99 | 4357 | -- | -- |
| 167.29 | 0.602 | 5.62 | 1.52 | 0.51 | 1.91 | 0.453 | -- | 0.107 | 9.76 | 21.43 | 6358 | -- | -- |
| 159.28 | 0.588 | 5.49 | 2.53 | 0.532 | 1.95 | -- | -6.06 | 0.187 | 9.15 | 24.95 | 4382 | -- | -- |
| 166 | 0.6 | 5.64 | 1.44 | 0.538 | 1.9 | -- | -- | 0.0576 | 9.92 | 21.42 | 4710 | -- | -- |
| 173.52 | 0.614 | 5.51 | 2.53 | -- | 1.98 | -- | -6.05 | 0.177 | -- | 25.02 | 4242 | -- | -- |
| 248.21 | 0.739 | 5.78 | 0.257 | 0.567 | -- | 0.569 | -- | -0.587 | 9.8 | -- | -- | -- | -- |
| 249.36 | 0.739 | 5.78 | 0.28 | 0.563 | -- | -- | -- | -0.585 | 10.1 | -- | -- | -- | -- |
| 181.83 | 0.628 | 5.65 | 1.49 | -- | 1.95 | -- | -- | 0.0823 | -- | 21.43 | 5090 | -- | -- |
| 174.99 | 0.616 | 5.68 | -- | 0.456 | 1.38 | -- | -- | -0.0394 | 9.11 | 22.9 | 1994 | -- | -- |
| 268.48 | 0.766 | 5.8 | 0.273 | -- | -- | -- | -- | -0.585 | -- | -- | -- | -- | -- |
| 251.43 | 0.742 | 5.79 | -- | 0.562 | -- | -- | -- | -0.616 | 10 | -- | -- | -- | -- |
| 186.44 | 0.636 | 5.7 | -- | -- | 1.37 | -- | -- | -0.132 | -- | 22.83 | 2088 | -- | -- |
| 270.44 | 0.768 | 5.81 | -- | -- | -- | -- | -- | -0.615 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 59 | 151.11 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 66 | 151.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 2 |
| 226 | 155.21 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 17 |
| 227 | 155.22 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 17 |
| 255 | 155.57 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 13 |
| 256 | 155.57 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 13 |
| 286 | 155.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 359 | 156.21 | temperature | 25 | 4320 | < th | dose independent | sin | 20 | NA |
| 366 | 156.27 | temperature | 25 | 4320 | > th | dose independent | sin | 20 | NA |
| 399 | 156.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 9 |
| 423 | 156.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 447 | 156.66 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 9 |
| 475 | 156.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 477 | 156.82 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 536 | 157.03 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 573 | 157.20 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 18 |
| 628 | 157.40 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 640 | 157.45 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 5 |
| 651 | 157.48 | temperature | 25 | 4320 | < th | dose independent | rect. | 9 | 23 |
| 680 | 157.60 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 687 | 157.62 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 23 |
| 690 | 157.63 | temperature | 25 | 4320 | > th | dose independent | rect. | 9 | 23 |
| 698 | 157.67 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 23 |
| 726 | 157.78 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 727 | 157.78 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 741 | 157.82 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 757 | 157.88 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 759 | 157.89 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 784 | 157.96 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 792 | 157.99 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 23 |
| 805 | 158.04 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 813 | 158.06 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 23 |
| 824 | 158.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 907 | 158.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 9 | 4 |
| 918 | 158.46 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 23 |
| 932 | 158.52 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |