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Os07g0176200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tesmin/TSO1-like, CXC domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.34 (0.0237) R2 : 0.901
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.25 (0.0573) R2dC : 0.713 R2C : 0.738
β3 : 2.03 (0.0761) R2dE : 0.156 R2E : 0.183
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.319 (0.0498) R2dN8 : 0.0104 R2N8 : 0.00049
σ : 0.444
deviance : 90.98
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C
peak time of C : 22.3
E
wheather : radiation
threshold : 2.254
memory length : 110
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 20.6
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.55 0.445 8.33 0.231 3.25 2.11 -0.189 0.15 0.334 22.4 2.385 103 20.4 --
89.49 0.441 8.34 0.229 3.24 2.08 -0.208 -- 0.332 22.3 2.355 107 20.5 --
89.46 0.441 8.33 0.222 3.26 2.04 -- 0.227 0.346 22.3 2.219 110 20.5 --
89.43 0.44 8.34 0.243 3.26 2.04 -- -- 0.325 22.3 2.244 110 20.5 --
203.48 0.668 8.26 0.243 -- 3.13 -- -0.042 0.282 -- 19.13 2 6.28 --
168.74 0.609 8.35 0.21 3.43 -- -0.0135 -- 0.23 23.5 -- -- -- --
168.74 0.608 8.35 0.211 3.43 -- -- -- 0.23 23.5 -- -- -- --
170.09 0.607 8.27 0.207 -- 3.37 -- -- 0.238 -- 375.7 27 6.67 --
90.98 0.444 8.34 -- 3.25 2.03 -- -- 0.319 22.3 2.254 110 20.6 --
907.64 1.41 8.27 0.305 -- -- -- -- 0.268 -- -- -- -- --
169.91 0.61 8.35 -- 3.43 -- -- -- 0.206 23.6 -- -- -- --
169.98 0.607 8.28 -- -- 3.4 -- -- 0.207 -- 6754 13 6.56 --
910.09 1.41 8.27 -- -- -- -- -- 0.234 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 92.35 radiation 1.0 270 < th dose dependent rect. 24 6
2 92.48 precipitation 0.1 270 < th dose independent rect. 5 19
3 92.48 precipitation 0.1 270 < th dose dependent rect. 5 19
5 93.03 radiation 1.0 270 < th dose independent rect. 24 5
8 93.05 radiation 1.0 90 > th dose independent sin 2 NA
12 93.09 radiation 1.0 90 < th dose independent sin 2 NA
13 93.09 wind 9.0 270 < th dose independent rect. 24 5
14 93.09 temperature 10.0 270 > th dose independent rect. 24 5
15 93.09 temperature 30.0 270 < th dose independent rect. 24 5
16 93.09 humidity 50.0 270 > th dose independent rect. 24 5
19 93.09 atmosphere 995.0 270 > th dose independent rect. 24 5
23 93.09 temperature 10.0 270 > th dose independent rect. 5 19
25 93.10 atmosphere 1015.0 270 < th dose independent rect. 24 5
29 93.28 radiation 1.0 270 < th dose dependent rect. 24 18
31 93.38 radiation 1.0 90 < th dose dependent sin 2 NA
34 93.96 precipitation 0.1 270 < th dose independent rect. 24 5
35 93.96 precipitation 0.1 270 < th dose dependent rect. 24 5
66 95.25 radiation 1.0 270 < th dose independent rect. 24 18
68 95.42 wind 9.0 270 < th dose independent rect. 5 19
72 95.79 humidity 50.0 270 > th dose dependent rect. 24 5
97 96.02 temperature 30.0 270 < th dose independent rect. 19 15
98 96.19 radiation 1.0 90 < th dose independent rect. 3 15
110 96.56 precipitation 0.1 270 < th dose independent rect. 6 17
111 96.56 precipitation 0.1 270 < th dose dependent rect. 6 17
118 96.76 atmosphere 995.0 270 > th dose independent rect. 5 19
148 97.32 wind 9.0 270 < th dose dependent rect. 24 5
165 97.76 radiation 1.0 90 < th dose dependent rect. 3 16
195 98.93 temperature 15.0 270 > th dose independent rect. 10 9
224 99.60 temperature 10.0 270 > th dose dependent rect. 24 5
232 99.83 wind 9.0 270 < th dose independent rect. 10 9
236 100.05 atmosphere 1015.0 270 < th dose independent rect. 5 19
241 100.20 temperature 10.0 270 > th dose dependent rect. 1 3
242 100.22 temperature 30.0 270 < th dose independent rect. 5 7
246 100.40 temperature 15.0 270 > th dose independent rect. 24 17
250 100.52 precipitation 0.1 10 < th dose independent rect. 6 21
251 100.52 precipitation 0.1 10 < th dose dependent rect. 6 21
265 100.81 wind 1.0 270 > th dose independent rect. 24 5
272 101.00 humidity 50.0 270 > th dose independent rect. 19 15
273 101.00 wind 9.0 270 < th dose independent rect. 24 17
278 101.01 atmosphere 1015.0 270 < th dose independent rect. 10 9
279 101.01 temperature 10.0 270 > th dose independent rect. 19 15
280 101.01 atmosphere 995.0 270 > th dose independent rect. 19 15
297 101.09 radiation 1.0 90 < th dose independent rect. 3 4
300 101.14 radiation 1.0 270 < th dose dependent sin 6 NA
305 101.28 wind 9.0 270 < th dose independent rect. 19 15
315 101.42 wind 1.0 270 > th dose independent rect. 5 19
319 101.47 precipitation 0.1 270 < th dose independent rect. 17 7
321 101.47 precipitation 0.1 270 < th dose dependent rect. 17 7
328 101.61 wind 9.0 10 < th dose independent rect. 3 3
329 101.61 temperature 10.0 10 > th dose independent rect. 3 3
331 101.61 temperature 30.0 10 < th dose independent rect. 3 3
332 101.61 humidity 50.0 10 > th dose independent rect. 3 3
335 101.61 atmosphere 995.0 10 > th dose independent rect. 3 3
336 101.61 atmosphere 1010.0 10 < th dose independent rect. 3 3
338 101.61 radiation 20.0 10 < th dose independent rect. 3 3
342 101.61 temperature 10.0 10 > th dose independent rect. 6 21
358 101.81 radiation 1.0 90 < th dose independent rect. 3 10
363 101.87 precipitation 0.1 270 < th dose independent rect. 19 15
364 101.87 precipitation 0.1 270 < th dose dependent rect. 19 15
394 102.14 temperature 10.0 270 > th dose independent rect. 17 7
395 102.14 radiation 20.0 270 < th dose independent rect. 17 7
399 102.16 atmosphere 1015.0 270 < th dose independent rect. 24 17
402 102.24 atmosphere 995.0 270 > th dose independent rect. 17 7
405 102.29 wind 9.0 270 < th dose independent rect. 17 7
462 102.80 temperature 10.0 270 > th dose independent rect. 5 8
463 102.80 atmosphere 995.0 270 > th dose independent rect. 5 8
464 102.80 atmosphere 1015.0 270 < th dose independent rect. 5 8
465 102.80 temperature 10.0 270 > th dose independent rect. 13 16
467 102.82 atmosphere 1015.0 270 < th dose independent rect. 6 17
468 102.82 radiation 40.0 270 < th dose dependent rect. 17 7
484 102.86 wind 1.0 270 > th dose independent rect. 10 9
501 102.93 wind 9.0 270 < th dose independent rect. 13 16
504 102.94 precipitation 0.1 270 < th dose independent rect. 5 8
505 102.94 precipitation 0.1 270 < th dose dependent rect. 5 8
509 102.97 temperature 10.0 10 > th dose dependent rect. 3 3
556 103.37 humidity 50.0 10 > th dose dependent rect. 3 3
559 103.39 atmosphere 995.0 10 > th dose independent rect. 6 21
572 103.60 humidity 50.0 270 > th dose independent rect. 5 7
578 103.64 radiation 40.0 270 < th dose independent rect. 19 15
582 103.73 wind 9.0 1440 < th dose independent rect. 3 4
583 103.73 temperature 10.0 1440 > th dose independent rect. 3 4
586 103.73 temperature 30.0 1440 < th dose independent rect. 3 4
590 103.73 humidity 50.0 1440 > th dose independent rect. 3 4
595 103.73 atmosphere 995.0 1440 > th dose independent rect. 3 4
596 103.73 radiation 40.0 1440 < th dose independent rect. 3 4
600 103.73 temperature 10.0 1440 > th dose independent rect. 7 20
629 103.85 precipitation 0.1 270 < th dose independent rect. 24 17
630 103.85 precipitation 0.1 270 < th dose dependent rect. 24 17
639 103.98 radiation 1.0 90 < th dose dependent rect. 3 10
642 104.00 atmosphere 1015.0 270 < th dose dependent rect. 1 4
654 104.19 humidity 50.0 270 > th dose independent rect. 17 7
656 104.19 humidity 50.0 270 > th dose independent rect. 24 17
663 104.25 wind 9.0 270 < th dose independent rect. 5 7
709 104.46 precipitation 0.1 270 < th dose independent rect. 10 9
710 104.46 precipitation 0.1 270 < th dose dependent rect. 10 9
735 104.79 radiation 1.0 270 < th dose independent sin 6 NA
738 104.85 radiation 1.0 270 > th dose independent sin 6 NA
756 104.88 atmosphere 1015.0 1440 < th dose independent rect. 4 3
818 105.33 atmosphere 995.0 270 > th dose independent rect. 24 17
826 105.47 radiation 1.0 90 > th dose independent rect. 6 7
862 105.86 humidity 50.0 270 > th dose independent rect. 13 16
978 106.80 atmosphere 995.0 10 > th dose dependent rect. 3 3
994 107.02 precipitation 0.1 270 < th dose independent rect. 12 17
996 107.02 precipitation 0.1 270 < th dose dependent rect. 12 17