Os07g0174700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0174700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.94 | 0.465 | 8.38 | 0.9 | 0.371 | -0.975 | -0.217 | 2.1 | 0.507 | 21.3 | 26.01 | 4708 | -- | -- |
| 99.91 | 0.466 | 8.4 | 0.439 | 0.35 | -0.718 | -0.109 | -- | 0.55 | 21.5 | 22.8 | 5888 | -- | -- |
| 98.11 | 0.461 | 8.38 | 0.905 | 0.371 | -0.975 | -- | 2.09 | 0.506 | 21.3 | 26 | 4707 | -- | -- |
| 99.23 | 0.464 | 8.44 | 0.404 | 0.374 | -0.76 | -- | -- | 0.409 | 21.5 | 26.1 | 4745 | -- | -- |
| 105.89 | 0.479 | 8.37 | 0.896 | -- | -0.953 | -- | 2.03 | 0.521 | -- | 25.51 | 4611 | -- | -- |
| 118.6 | 0.511 | 8.44 | 0.141 | 0.324 | -- | -0.278 | -- | 0.396 | 21.4 | -- | -- | -- | -- |
| 118.88 | 0.511 | 8.44 | 0.151 | 0.325 | -- | -- | -- | 0.396 | 21.5 | -- | -- | -- | -- |
| 106.23 | 0.48 | 8.42 | 0.417 | -- | -0.695 | -- | -- | 0.471 | -- | 25.83 | 5850 | -- | -- |
| 103.05 | 0.473 | 8.45 | -- | 0.353 | -0.653 | -- | -- | 0.364 | 21.4 | 26.51 | 4762 | -- | -- |
| 125.08 | 0.523 | 8.43 | 0.153 | -- | -- | -- | -- | 0.395 | -- | -- | -- | -- | -- |
| 119.47 | 0.511 | 8.45 | -- | 0.325 | -- | -- | -- | 0.379 | 21.5 | -- | -- | -- | -- |
| 110.07 | 0.489 | 8.44 | -- | -- | -0.557 | -- | -- | 0.371 | -- | 27.65 | 5848 | -- | -- |
| 125.69 | 0.523 | 8.44 | -- | -- | -- | -- | -- | 0.378 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 6 | 92.14 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 9 | 92.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 25 | 93.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 35 | 93.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 38 | 93.69 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 40 | 93.72 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 57 | 94.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 62 | 94.23 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 21 |
| 73 | 94.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 111 | 94.94 | temperature | 25 | 10 | > th | dose independent | rect. | 3 | 6 |
| 117 | 94.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 118 | 94.98 | temperature | 20 | 30 | > th | dose dependent | rect. | 12 | 21 |
| 166 | 95.34 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 173 | 95.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 11 |
| 239 | 96.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 261 | 96.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 282 | 96.29 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 309 | 96.56 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 372 | 96.98 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 453 | 97.44 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 11 |
| 505 | 97.69 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 518 | 97.74 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 1 |
| 582 | 98.03 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 602 | 98.13 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 21 |
| 613 | 98.20 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 621 | 98.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 623 | 98.24 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 3 |
| 681 | 98.44 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 13 |
| 688 | 98.45 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 17 |
| 728 | 98.59 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 5 |
| 732 | 98.61 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 16 |
| 742 | 98.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 1 | 8 |
| 752 | 98.68 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 19 |
| 762 | 98.72 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 763 | 98.72 | temperature | 25 | 4320 | > th | dose dependent | sin | 5 | NA |
| 770 | 98.74 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 13 |
| 788 | 98.78 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 808 | 98.83 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 10 |
| 822 | 98.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 8 |
| 856 | 98.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 899 | 99.03 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 12 |
| 922 | 99.07 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 14 |