Os07g0172600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os07g0172600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.26 | 0.405 | 10.6 | 0.79 | 1.25 | -0.908 | 0.334 | -0.225 | -0.464 | 19.7 | 12.1 | 90 | -- | -- |
| 74.48 | 0.402 | 10.6 | 0.796 | 1.25 | -0.902 | 0.193 | -- | -0.463 | 19.6 | 12.15 | 90 | -- | -- |
| 74.51 | 0.402 | 10.6 | 0.786 | 1.26 | -0.919 | -- | -0.114 | -0.465 | 19.7 | 11.85 | 88 | -- | -- |
| 74.57 | 0.402 | 10.6 | 0.788 | 1.26 | -0.927 | -- | -- | -0.464 | 19.7 | 11.84 | 90 | -- | -- |
| 80.53 | 0.418 | 10.5 | 0.726 | -- | -1.56 | -- | -0.628 | -0.474 | -- | 2.519 | 623 | -- | -- |
| 86.97 | 0.437 | 10.5 | 0.796 | 1.37 | -- | 0.462 | -- | -0.411 | 16.7 | -- | -- | -- | -- |
| 87.53 | 0.438 | 10.5 | 0.799 | 1.38 | -- | -- | -- | -0.408 | 16.7 | -- | -- | -- | -- |
| 81.23 | 0.42 | 10.5 | 0.707 | -- | -1.57 | -- | -- | -0.487 | -- | 2.684 | 626 | -- | -- |
| 90.46 | 0.443 | 10.6 | -- | 1.24 | -0.935 | -- | -- | -0.555 | 19.7 | 14.46 | 91 | -- | -- |
| 187.8 | 0.64 | 10.5 | 0.747 | -- | -- | -- | -- | -0.444 | -- | -- | -- | -- | -- |
| 104.34 | 0.478 | 10.6 | -- | 1.36 | -- | -- | -- | -0.497 | 16.7 | -- | -- | -- | -- |
| 94.27 | 0.452 | 10.6 | -- | -- | -1.59 | -- | -- | -0.561 | -- | 2.22 | 629 | -- | -- |
| 202.5 | 0.664 | 10.5 | -- | -- | -- | -- | -- | -0.527 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 32 | 68.49 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 19 |
| 35 | 68.69 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 43 | 69.05 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 12 |
| 46 | 69.08 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 48 | 69.11 | wind | 7.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 51 | 69.18 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 53 | 69.20 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 8 |
| 62 | 69.32 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 13 |
| 63 | 69.33 | wind | 7.0 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 64 | 69.34 | wind | 7.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 69 | 69.38 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 6 |
| 74 | 69.42 | wind | 7.0 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 87 | 69.53 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 106 | 69.64 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 22 | 13 |
| 118 | 69.72 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 157 | 69.90 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 177 | 69.98 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 180 | 69.99 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 200 | 70.09 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 15 |
| 203 | 70.12 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 21 |
| 204 | 70.12 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 214 | 70.18 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 217 | 70.19 | wind | 9.0 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 242 | 70.31 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 13 |
| 268 | 70.43 | wind | 9.0 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 273 | 70.44 | radiation | 10.0 | 90 | < th | dose dependent | sin | 3 | NA |
| 274 | 70.44 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 296 | 70.53 | humidity | 60.0 | 10 | > th | dose independent | rect. | 12 | 19 |
| 301 | 70.55 | wind | 9.0 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 319 | 70.59 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 4 |
| 342 | 70.62 | wind | 9.0 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 345 | 70.62 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 351 | 70.63 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 22 |
| 371 | 70.67 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 389 | 70.73 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 7 |
| 394 | 70.75 | wind | 9.0 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 396 | 70.75 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 432 | 70.83 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 21 |
| 442 | 70.86 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 11 |
| 449 | 70.88 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 471 | 70.97 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 15 |
| 476 | 70.99 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 514 | 71.10 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 536 | 71.13 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 546 | 71.16 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 548 | 71.16 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 553 | 71.19 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 575 | 71.24 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 10 |
| 599 | 71.33 | wind | 9.0 | 14400 | > th | dose dependent | sin | 11 | NA |
| 601 | 71.33 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 14 |
| 658 | 71.47 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 6 |
| 663 | 71.48 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 665 | 71.48 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 666 | 71.48 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 669 | 71.48 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 670 | 71.48 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 672 | 71.48 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 679 | 71.48 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 21 |
| 680 | 71.48 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 692 | 71.49 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 711 | 71.53 | temperature | 25.0 | 90 | > th | dose independent | rect. | 22 | 13 |
| 719 | 71.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 13 |
| 724 | 71.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 13 |
| 736 | 71.60 | radiation | 30.0 | 10 | < th | dose dependent | sin | 6 | NA |
| 742 | 71.61 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 751 | 71.64 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 753 | 71.65 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 761 | 71.69 | radiation | 30.0 | 90 | < th | dose dependent | sin | 8 | NA |
| 768 | 71.71 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 794 | 71.78 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 7 |
| 803 | 71.79 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 827 | 71.86 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 3 |
| 828 | 71.86 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 838 | 71.89 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 11 |
| 850 | 71.92 | radiation | 10.0 | 10 | < th | dose dependent | sin | 2 | NA |
| 878 | 71.97 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 21 |
| 880 | 71.97 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 887 | 72.00 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 6 |
| 905 | 72.04 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 19 |
| 917 | 72.09 | radiation | 10.0 | 10 | < th | dose independent | rect. | 1 | 13 |
| 933 | 72.12 | wind | 5.0 | 14400 | > th | dose dependent | sin | 11 | NA |
| 945 | 72.15 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 7 | 20 |
| 947 | 72.15 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 7 | 20 |
| 953 | 72.18 | wind | 7.0 | 270 | < th | dose independent | rect. | 20 | 13 |
| 954 | 72.18 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 13 |
| 977 | 72.24 | radiation | 1.0 | 90 | > th | dose dependent | sin | 10 | NA |
| 980 | 72.25 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 988 | 72.27 | wind | 9.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 989 | 72.27 | wind | 9.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 998 | 72.28 | wind | 9.0 | 90 | < th | dose dependent | rect. | 7 | 18 |